myRT

myRT report for GCA_003697265.1_ASM369726v1

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Seq: CP033228.1 Sphingobium yanoikuyae strain SJTF8 plasmid pF2, complete sequence (191911 bp)
Overview 1 RT 1: 168151-174520 bp Neighborhood of RT #1 [168151, 174549] TraU RVT-GII GIIM TrbC_Ftype PRK12355 Feature: gene Location: 168151-168417 bp Feature: gene Location: 168414-169442 bp Ori: AYO76067.1 Feature: domain Description: TraU Location: 168516-169434 bp Feature: domain Description: TraU Location: 1 6851 6-1 69434 bp Feature: gene Location: 170038-171660 bp Ori: AYO76068.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170362-171118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 70362-1 71 1 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 171193-171406 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 1 93-1 71 406 bp Feature: gene Location: 171669-172433 bp Ori: AYO76069.1 Gene: trbC Feature: domain Description: TrbC_Ftype Location: 172032-172365 bp Feature: domain Description: TrbC_Ftype Location: 1 72032-1 72365 bp Feature: gene Location: 172435-174549 bp Ori: AYO76070.1 Feature: domain Description: PRK12355 Location: 172627-174520 bp Feature: domain Description: PRK1 2355 Location: 1 72627-1 74520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraU (pfam06834), RVT-GII, GIIM (pfam08388), TrbC_Ftype (TIGR02742), PRK12355 (type-F conjugative transfer system mating-pair stabilization protein TraN)

Seq: CP033230.1 Sphingobium yanoikuyae strain SJTF8 chromosome, complete genome (5172777 bp)
Overview 1 RT 1: 4945593-4948638 bp Neighborhood of RT #1 [4945593, 4948638] InsE RVT-Retrons Trypsin_2 Feature: gene Location: 4945593-4945881 bp Ori: AYO80233.1 Feature: domain Description: InsE Location: 4945602-4945881 bp Feature: domain Description: InsE Location: 4945602 -4945881 bp Feature: gene Location: 4944653-4945593 bp Feature: gene Location: 4946119-4947696 bp Ori: AYO80234.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4946275-4946875 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49462 75-4946875 bp Feature: domain Description: Trypsin_2 Location: 4947220-4947622 bp Feature: domain Description: Trypsin_2 Location: 49472 2 0-494762 2 bp Feature: gene Location: 4948009-4948200 bp Feature: gene Location: 4948348-4948638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-Retrons, Trypsin_2 (pfam13365)