myRT

myRT report for GCA_003710205.1_ASM371020v1

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Seq: CP033343.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN076213 chromosome, complete genome (4709669 bp)
Overview 1 RT 1: 1133595-1136658 bp 2 RT 2: 4172456-4178285 bp Neighborhood of RT #1 [1133595, 1136658] RVT-Retrons InsE Neighborhood of RT #2 [4172456, 4178290] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 1133595-1133804 bp Feature: gene Location: 1133870-1134710 bp Feature: gene Location: 1134760-1135719 bp Ori: AYP80540.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1134940-1135462 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 34940-1 1 35462 bp Feature: gene Location: 1135750-1135977 bp Feature: gene Location: 1136409-1136658 bp Ori: AYP80542.1 Feature: domain Description: InsE Location: 1136418-1136658 bp Feature: domain Description: InsE Location: 1 1 3641 8-1 1 36658 bp Feature: gene Location: 4172456-4172809 bp Ori: AYP83358.1 Feature: domain Description: DUF4156 Location: 4172525-4172801 bp Feature: domain Description: DUF41 56 Location: 41 72525-41 72801 bp Feature: gene Location: 4173164-4173394 bp Ori: AYP83980.1 Feature: domain Description: DUF2188 Location: 4173182-4173359 bp Feature: domain Description: DUF21 88 Location: 41 731 82-41 73359 bp Feature: gene Location: 4173540-4175231 bp Ori: AYP83981.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4173621-4173855 bp Feature: domain Description: RVT_N Location: 41 73621 -41 73855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4173909-4174554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 73909-41 74554 bp Feature: domain Description: GIIM Note: maturase Location: 4174608-4174839 bp Feature: domain Description: GIIM Note: maturase Location: 41 74608-41 74839 bp Feature: domain Description: HNHc Note: nucleases Location: 4175049-4175205 bp Feature: domain Description: HNHc Note: nucleases Location: 41 75049-41 75205 bp Feature: gene Location: 4176307-4177953 bp Ori: AYP83359.1 Feature: domain Description: groEL Location: 4176313-4177939 bp Feature: domain Description: groEL Location: 41 7631 3-41 77939 bp Feature: gene Location: 4177997-4178290 bp Ori: AYP83360.1 Feature: domain Description: groES Location: 4178000-4178285 bp Feature: domain Description: groES Location: 41 78000-41 78285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, InsE (COG2963), DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)