myRT

myRT report for GCA_003711065.1_ASM371106v1

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Seq: CP033404.1 Klebsiella pneumoniae strain WCHKP115069 plasmid pKPC2_115069, complete sequence (154986 bp)
Overview 1 RT 1: 28418-32639 bp 2 RT 2: 125093-129295 bp Neighborhood of RT #1 [28418, 32639] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [125093, 129312] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 28418-28840 bp Ori: AYQ04645.1 Feature: domain Description: DUF1380 Location: 28421-28715 bp Feature: domain Description: DUF1 380 Location: 28421 -2871 5 bp Feature: gene Location: 28837-29028 bp Feature: gene Location: 29342-31009 bp Ori: AYQ04647.1 Gene: ltrA Feature: domain Description: RVT_N Location: 29390-29627 bp Feature: domain Description: RVT_N Location: 29390-29627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29678-30320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29678-30320 bp Feature: domain Description: GIIM Note: maturase Location: 30371-30605 bp Feature: domain Description: GIIM Note: maturase Location: 30371 -30605 bp Feature: domain Description: HNHc Note: nucleases Location: 30815-30974 bp Feature: domain Description: HNHc Note: nucleases Location: 3081 5-30974 bp Feature: gene Location: 31889-32146 bp Feature: gene Location: 32409-32639 bp Feature: gene Location: 125093-125764 bp Ori: AYQ04761.1 Feature: domain Description: Plasmid_stab_B Location: 125108-125315 bp Feature: domain Description: Plasmid_stab_B Location: 1 251 08-1 2531 5 bp Feature: domain Description: Plasmid_stab_B Location: 125420-125627 bp Feature: domain Description: Plasmid_stab_B Location: 1 25420-1 25627 bp Feature: gene Location: 125767-126738 bp Ori: AYQ04762.1 Feature: domain Description: StbA Location: 125770-126715 bp Feature: domain Description: StbA Location: 1 25770-1 2671 5 bp Feature: gene Location: 126987-128471 bp Ori: AYQ04763.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127389-128079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27389-1 28079 bp Feature: gene Location: 128471-128722 bp Feature: gene Location: 128881-129312 bp Ori: AYQ04765.1 Feature: domain Description: PRK10276 Location: 128932-129295 bp Feature: domain Description: PRK1 0276 Location: 1 28932-1 29295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Plasmid_stab_B (pfam10784), StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP033402.1 Klebsiella pneumoniae strain WCHKP115069 plasmid p1_115069, complete sequence (208288 bp)
Overview 1 RT 1: 198525-201291 bp Neighborhood of RT #1 [198525, 201305] RVT-GII PRK10276 Feature: gene Location: 198525-198755 bp Feature: gene Location: 198923-198997 bp Feature: gene Location: 198990-200474 bp Ori: AYQ04582.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199392-200082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199392 -2 00082 bp Feature: gene Location: 200474-200725 bp Feature: gene Location: 200880-201305 bp Ori: AYQ04584.1 Feature: domain Description: PRK10276 Location: 200883-201291 bp Feature: domain Description: PRK102 76 Location: 2 00883-2 012 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP033405.1 Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome (5434589 bp)
Overview 1 RT 1: 1245795-1250680 bp 2 RT 2: 1409837-1412613 bp 3 RT 3: 1870321-1875193 bp 4 RT 4: 1890934-1897196 bp 5 RT 5: 3053597-3056105 bp 6 RT 6: 3256003-3260102 bp 7 RT 7: 3328835-3333097 bp 8 RT 8: 3683510-3687536 bp 9 RT 9: 3691221-3696059 bp Neighborhood of RT #1 [1245795, 1250685] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1409837, 1412613] RVT-GII Neighborhood of RT #3 [1870321, 1875207] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1890934, 1897196] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3053597, 3056105] RVT-GII Neighborhood of RT #6 [3256003, 3260113] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3328835, 3333135] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3683510, 3688420] DinI RVT-GII Phage_GPA Neighborhood of RT #9 [3691221, 3696109] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1245795-1248179 bp Ori: AYQ06009.1 Feature: domain Description: Phage_GPA Location: 1246359-1247325 bp Feature: domain Description: Phage_GPA Location: 12463 59-12473 25 bp Feature: gene Location: 1248409-1248660 bp Feature: gene Location: 1248660-1250144 bp Ori: AYQ06011.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249062-1249752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249062-1249752 bp Feature: gene Location: 1250252-1250440 bp Feature: gene Location: 1250452-1250685 bp Ori: AYQ06013.1 Feature: domain Description: DinI Location: 1250497-1250680 bp Feature: domain Description: DinI Location: 1250497-1250680 bp Feature: gene Location: 1409837-1410040 bp Feature: gene Location: 1410033-1410371 bp Feature: gene Location: 1410468-1411952 bp Ori: AYQ06172.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1410870-1411560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1410870-1411560 bp Feature: gene Location: 1411952-1412203 bp Feature: gene Location: 1412356-1412613 bp Feature: gene Location: 1870321-1871490 bp Ori: AYQ06555.1 Gene: dacD Feature: domain Description: dacD Location: 1870330-1871485 bp Feature: domain Description: dacD Location: 18703 3 0-1871485 bp Feature: gene Location: 1871760-1872011 bp Feature: gene Location: 1872011-1873495 bp Ori: AYQ06557.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1872413-1873103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1872413 -1873 103 bp Feature: gene Location: 1873577-1874050 bp Ori: AYQ06558.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1873580-1874039 bp Feature: domain Description: PRK10016 Location: 1873 580-187403 9 bp Feature: gene Location: 1874149-1875207 bp Ori: AYQ06559.1 Feature: domain Description: YccC Location: 1874155-1875193 bp Feature: domain Description: YccC Location: 1874155-1875193 bp Feature: gene Location: 1890934-1892037 bp Ori: AYQ06578.1 Feature: domain Description: STKc_PknB_like Location: 1891066-1891507 bp Feature: domain Description: STKc_PknB_like Location: 1891066-1891507 bp Feature: gene Location: 1892107-1892349 bp Feature: gene Location: 1892596-1893696 bp Ori: AYQ06579.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1892776-1893310 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1892776-1893 3 10 bp Feature: gene Location: 1893811-1896057 bp Ori: AYQ06580.1 Feature: domain Description: AAA_15 Location: 1893814-1894822 bp Feature: domain Description: AAA_15 Location: 1893 814-1894822 bp Feature: gene Location: 1896966-1897196 bp Feature: gene Location: 3053597-3053881 bp Feature: gene Location: 3053895-3053966 bp Feature: gene Location: 3053959-3055443 bp Ori: AYQ07645.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3054361-3055051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0543 61-3 055051 bp Feature: gene Location: 3055443-3055694 bp Feature: gene Location: 3055896-3056105 bp Feature: gene Location: 3256003-3257268 bp Ori: AYQ07853.1 Gene: umuC Feature: domain Description: umuC Location: 3256006-3257266 bp Feature: domain Description: umuC Location: 3 256006-3 257266 bp Feature: gene Location: 3257271-3257690 bp Ori: AYQ07854.1 Feature: domain Description: PRK10276 Location: 3257274-3257685 bp Feature: domain Description: PRK10276 Location: 3 257274-3 257685 bp Feature: gene Location: 3257769-3259253 bp Ori: AYQ07855.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3258171-3258861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 258171-3 258861 bp Feature: gene Location: 3259253-3259504 bp Feature: gene Location: 3259871-3260113 bp Ori: AYQ07857.1 Feature: domain Description: DinI Location: 3259922-3260102 bp Feature: domain Description: DinI Location: 3 259922-3 260102 bp Feature: gene Location: 3328835-3329125 bp Feature: gene Location: 3329137-3329370 bp Ori: AYQ07929.1 Feature: domain Description: PRK10597 Location: 3329140-3329365 bp Feature: domain Description: PRK10597 Location: 3 3 29140-3 3 293 65 bp Feature: gene Location: 3329449-3330933 bp Ori: AYQ07930.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3329851-3330541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 29851-3 3 3 0541 bp Feature: gene Location: 3330933-3331184 bp Feature: gene Location: 3331774-3333135 bp Ori: AYQ07932.1 Feature: domain Description: PRK05318 Location: 3331798-3333097 bp Feature: domain Description: PRK053 18 Location: 3 3 3 1798-3 3 3 3 097 bp Feature: gene Location: 3683510-3683815 bp Ori: AYQ08259.1 Feature: domain Description: DinI Location: 3683624-3683810 bp Feature: domain Description: DinI Location: 3 683 624-3 683 810 bp Feature: gene Location: 3683754-3683942 bp Feature: gene Location: 3684043-3685527 bp Ori: AYQ08260.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3684445-3685135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 684445-3 68513 5 bp Feature: gene Location: 3685527-3685778 bp Feature: gene Location: 3686006-3688420 bp Ori: AYQ08262.1 Feature: domain Description: Phage_GPA Location: 3686570-3687536 bp Feature: domain Description: Phage_GPA Location: 3 686570-3 68753 6 bp Feature: gene Location: 3691221-3692099 bp Ori: AYQ08270.1 Feature: domain Description: Phage_CI_repr Location: 3691248-3691431 bp Feature: domain Description: Phage_CI_repr Location: 3 691248-3 69143 1 bp Feature: domain Description: Phage_CI_repr Location: 3691560-3691752 bp Feature: domain Description: Phage_CI_repr Location: 3 691560-3 691752 bp Feature: domain Description: Phage_CI_C Location: 3691779-3692073 bp Feature: domain Description: Phage_CI_C Location: 3 691779-3 692073 bp Feature: gene Location: 3692111-3693055 bp Feature: gene Location: 3693154-3694638 bp Ori: AYQ08272.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3693556-3694246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 693 556-3 694246 bp Feature: gene Location: 3694638-3694889 bp Feature: gene Location: 3695057-3696109 bp Ori: AYQ08274.1 Feature: domain Description: int Location: 3695060-3696059 bp Feature: domain Description: int Location: 3 695060-3 696059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)