myRT

myRT report for GCA_003713085.1_ASM371308v1

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Seq: CP033432.1 Pseudomonas aeruginosa strain BA15561 chromosome, complete genome (6793961 bp)
Overview 1 RT 1: 3991470-3999670 bp 2 RT 2: 4015934-4026233 bp 3 RT 3: 5134686-5140934 bp Neighborhood of RT #1 [3991470, 3999678] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [4015934, 4026244] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Neighborhood of RT #3 [5134686, 5141110] EAL IS5 RVT_N RVT-GII GIIM RVT-GII GIIM DUF772 Feature: gene Location: 3991470-3992486 bp Ori: AYQ83406.1 Feature: domain Description: COG3178 Location: 3991473-3992472 bp Feature: domain Description: COG31 78 Location: 3991 473-3992472 bp Feature: gene Location: 3993359-3993571 bp Feature: gene Location: 3993759-3995471 bp Ori: AYQ83407.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3993816-3994059 bp Feature: domain Description: RVT_N Location: 399381 6-3994059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994104-3994740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39941 04-3994740 bp Feature: domain Description: YkfC Location: 3994947-3995100 bp Feature: domain Description: YkfC Location: 3994947-39951 00 bp Feature: domain Description: HNH Note: nucleases Location: 3995277-3995415 bp Feature: domain Description: HNH Note: nucleases Location: 3995277-399541 5 bp Feature: gene Location: 3995604-3998405 bp Ori: AYQ83408.1 Gene: lptD Feature: domain Description: LptD Location: 3995799-3998391 bp Feature: domain Description: LptD Location: 3995799-3998391 bp Feature: gene Location: 3998386-3999678 bp Ori: AYQ83409.1 Feature: domain Description: PRK10770 Location: 3998476-3999670 bp Feature: domain Description: PRK1 0770 Location: 3998476-3999670 bp Feature: gene Location: 4015934-4017787 bp Ori: AYQ83427.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 4015946-4017785 bp Feature: domain Description: PRK05658 Location: 401 5946-401 7785 bp Feature: gene Location: 4017894-4021631 bp Ori: AYQ83428.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 4018002-4018659 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 401 8002-401 8659 bp Feature: domain Description: PRK09776 Location: 4018872-4019343 bp Feature: domain Description: PRK09776 Location: 401 8872-401 9343 bp Feature: domain Description: PAS Location: 4019388-4019925 bp Feature: domain Description: PAS Location: 401 9388-401 9925 bp Feature: domain Description: PRK10060 Location: 4019934-4021581 bp Feature: domain Description: PRK1 0060 Location: 401 9934-4021 581 bp Feature: gene Location: 4022712-4024397 bp Ori: AYQ83429.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4022769-4023009 bp Feature: domain Description: RVT_N Location: 4022769-4023009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4023057-4023693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4023057-4023693 bp Feature: domain Description: GIIM Note: maturase Location: 4023747-4023978 bp Feature: domain Description: GIIM Note: maturase Location: 4023747-4023978 bp Feature: domain Description: HNH Note: nucleases Location: 4024230-4024368 bp Feature: domain Description: HNH Note: nucleases Location: 4024230-4024368 bp Feature: gene Location: 4024700-4024861 bp Feature: gene Location: 4025123-4026244 bp Ori: AYQ83431.1 Feature: domain Description: COG3177 Location: 4025141-4026233 bp Feature: domain Description: COG31 77 Location: 40251 41 -4026233 bp Feature: gene Location: 5134686-5135429 bp Ori: AYQ84360.1 Feature: domain Description: EAL Location: 5134746-5135406 bp Feature: domain Description: EAL Location: 51 34746-51 35406 bp Feature: gene Location: 5136098-5136556 bp Feature: domain Description: IS5 Location: 5136104-5136530 bp Feature: domain Description: IS5 Location: 51 361 04-51 36530 bp Feature: gene Location: 5136629-5138134 bp Ori: AYQ84361.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5136710-5136935 bp Feature: domain Description: RVT_N Location: 51 3671 0-51 36935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5136986-5137628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 36986-51 37628 bp Feature: domain Description: GIIM Note: maturase Location: 5137679-5137913 bp Feature: domain Description: GIIM Note: maturase Location: 51 37679-51 3791 3 bp Feature: gene Location: 5138810-5140078 bp Ori: AYQ84362.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5139023-5139680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 39023-51 39680 bp Feature: domain Description: GIIM Note: maturase Location: 5139758-5139980 bp Feature: domain Description: GIIM Note: maturase Location: 51 39758-51 39980 bp Feature: gene Location: 5140467-5140562 bp Feature: gene Location: 5140598-5141110 bp Feature: domain Description: DUF772 Location: 5140748-5140934 bp Feature: domain Description: DUF772 Location: 51 40748-51 40934 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Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), EAL (smart00052), IS5 (COG3039), DUF772 (pfam05598)