myRT

myRT report for GCA_003716765.1_ASM371676v1

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Seq: CP033439.1 Pseudomonas aeruginosa strain SP4528 chromosome, complete genome (6877287 bp)
Overview 1 RT 1: 105096-111344 bp 2 RT 2: 5847707-5855907 bp 3 RT 3: 5872171-5882470 bp Neighborhood of RT #1 [105096, 111520] EAL IS5 RVT_N RVT-GII GIIM RVT-GII GIIM DUF772 Neighborhood of RT #2 [5847707, 5855915] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #3 [5872171, 5882481] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 105096-105839 bp Ori: AYR10548.1 Feature: domain Description: EAL Location: 105156-105816 bp Feature: domain Description: EAL Location: 1 051 56-1 0581 6 bp Feature: gene Location: 106508-106966 bp Feature: domain Description: IS5 Location: 106514-106940 bp Feature: domain Description: IS5 Location: 1 0651 4-1 06940 bp Feature: gene Location: 107039-108544 bp Ori: AYR10549.1 Gene: ltrA Feature: domain Description: RVT_N Location: 107120-107345 bp Feature: domain Description: RVT_N Location: 1 071 20-1 07345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107396-108038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07396-1 08038 bp Feature: domain Description: GIIM Note: maturase Location: 108089-108323 bp Feature: domain Description: GIIM Note: maturase Location: 1 08089-1 08323 bp Feature: gene Location: 109220-110488 bp Ori: AYR10550.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109433-110090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 09433-1 1 0090 bp Feature: domain Description: GIIM Note: maturase Location: 110168-110390 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 01 68-1 1 0390 bp Feature: gene Location: 110877-110972 bp Feature: gene Location: 111008-111520 bp Feature: domain Description: DUF772 Location: 111158-111344 bp Feature: domain Description: DUF772 Location: 1 1 1 1 58-1 1 1 344 bp Feature: gene Location: 5847707-5848723 bp Ori: AYR15418.1 Feature: domain Description: COG3178 Location: 5847710-5848709 bp Feature: domain Description: COG31 78 Location: 584771 0-5848709 bp Feature: gene Location: 5849596-5849808 bp Feature: gene Location: 5849996-5851708 bp Ori: AYR15420.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5850053-5850296 bp Feature: domain Description: RVT_N Location: 5850053-5850296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5850341-5850977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5850341 -5850977 bp Feature: domain Description: YkfC Location: 5851184-5851337 bp Feature: domain Description: YkfC Location: 5851 1 84-5851 337 bp Feature: domain Description: HNH Note: nucleases Location: 5851514-5851652 bp Feature: domain Description: HNH Note: nucleases Location: 5851 51 4-5851 652 bp Feature: gene Location: 5851841-5854642 bp Ori: AYR15421.1 Gene: lptD Feature: domain Description: LptD Location: 5852036-5854628 bp Feature: domain Description: LptD Location: 5852036-5854628 bp Feature: gene Location: 5854623-5855915 bp Ori: AYR15422.1 Feature: domain Description: PRK10770 Location: 5854713-5855907 bp Feature: domain Description: PRK1 0770 Location: 585471 3-5855907 bp Feature: gene Location: 5872171-5874024 bp Ori: AYR15440.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 5872183-5874022 bp Feature: domain Description: PRK05658 Location: 58721 83-5874022 bp Feature: gene Location: 5874131-5877868 bp Ori: AYR15441.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5874239-5874896 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5874239-5874896 bp Feature: domain Description: PRK09776 Location: 5875109-5875580 bp Feature: domain Description: PRK09776 Location: 58751 09-5875580 bp Feature: domain Description: PAS Location: 5875625-5876162 bp Feature: domain Description: PAS Location: 5875625-58761 62 bp Feature: domain Description: PRK10060 Location: 5876171-5877818 bp Feature: domain Description: PRK1 0060 Location: 58761 71 -587781 8 bp Feature: gene Location: 5878949-5880634 bp Ori: AYR15442.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5879006-5879246 bp Feature: domain Description: RVT_N Location: 5879006-5879246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5879294-5879930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5879294-5879930 bp Feature: domain Description: GIIM Note: maturase Location: 5879984-5880215 bp Feature: domain Description: GIIM Note: maturase Location: 5879984-588021 5 bp Feature: domain Description: HNH Note: nucleases Location: 5880467-5880605 bp Feature: domain Description: HNH Note: nucleases Location: 5880467-5880605 bp Feature: gene Location: 5880937-5881098 bp Feature: gene Location: 5881360-5882481 bp Ori: AYR15444.1 Feature: domain Description: COG3177 Location: 5881378-5882470 bp Feature: domain Description: COG31 77 Location: 5881 378-5882470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EAL (smart00052), IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), YkfC (COG3344), HNH (pfam01844), LptD (COG1452)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), COG3177 (Fic family protein )