myRT

myRT report for GCA_003719775.1_ASM371977v1

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Seq: CP033510.1 Shigella flexneri strain 2016AM-0877 chromosome, complete genome (4719160 bp)
Overview 1 RT 1: 729065-732584 bp 2 RT 2: 1208438-1211847 bp 3 RT 3: 1329673-1337042 bp 4 RT 4: 3218095-3227069 bp 5 RT 5: 3276636-3280904 bp 6 RT 6: 4023181-4026648 bp 7 RT 7: 4388049-4392043 bp Neighborhood of RT #1 [729065, 732972] PRK09692 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [1208438, 1212235] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [1329673, 1337439] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [3218095, 3227464] InsE RVT-GII PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Neighborhood of RT #5 [3276636, 3281297] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [4023181, 4027045] Inovirus_Gp2 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #7 [4388049, 4392069] InsE RVT-GII GIIM PHA02517 Phage_pRha Feature: gene Location: 729065-729529 bp Feature: domain Description: PRK09692 Location: 729071-729530 bp Feature: domain Description: PRK09692 Location: 729071 -729530 bp Feature: gene Location: 729534-730022 bp Feature: domain Description: PHA02517 Location: 729537-730011 bp Feature: domain Description: PHA0251 7 Location: 729537-73001 1 bp Feature: gene Location: 730103-731611 bp Ori: AYV07095.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730361-731093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730361 -731 093 bp Feature: domain Description: GIIM Note: maturase Location: 731168-731366 bp Feature: domain Description: GIIM Note: maturase Location: 731 1 68-731 366 bp Feature: gene Location: 731920-732288 bp Feature: gene Location: 732284-732972 bp Feature: domain Description: InsE Location: 732293-732584 bp Feature: domain Description: InsE Location: 732293-732584 bp Feature: gene Location: 1208438-1208800 bp Feature: gene Location: 1208797-1209285 bp Feature: domain Description: PHA02517 Location: 1208800-1209274 bp Feature: domain Description: PHA0251 7 Location: 1 208800-1 209274 bp Feature: gene Location: 1209366-1210874 bp Ori: AYV07111.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209624-1210356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 209624-1 21 0356 bp Feature: domain Description: GIIM Note: maturase Location: 1210431-1210629 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 0431 -1 21 0629 bp Feature: gene Location: 1211183-1211551 bp Feature: gene Location: 1211547-1212235 bp Feature: domain Description: InsE Location: 1211556-1211847 bp Feature: domain Description: InsE Location: 1 21 1 556-1 21 1 847 bp Feature: gene Location: 1329673-1333791 bp Ori: AYV04291.1 Feature: domain Description: Peptidase_S6 Location: 1329826-1331998 bp Feature: domain Description: Peptidase_S6 Location: 1 329826-1 331 998 bp Feature: domain Description: autotrans_barl Location: 1332562-1333789 bp Feature: domain Description: autotrans_barl Location: 1 332562-1 333789 bp Feature: gene Location: 1333956-1334429 bp Feature: domain Description: PHA02517 Location: 1333962-1334427 bp Feature: domain Description: PHA0251 7 Location: 1 333962-1 334427 bp Feature: gene Location: 1334519-1336027 bp Ori: AYV07120.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1334777-1335509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 334777-1 335509 bp Feature: domain Description: GIIM Note: maturase Location: 1335584-1335782 bp Feature: domain Description: GIIM Note: maturase Location: 1 335584-1 335782 bp Feature: gene Location: 1336336-1336707 bp Feature: gene Location: 1336700-1337439 bp Feature: domain Description: InsE Location: 1336703-1337042 bp Feature: domain Description: InsE Location: 1 336703-1 337042 bp Feature: gene Location: 3218095-3218834 bp Feature: domain Description: InsE Location: 3218098-3218443 bp Feature: domain Description: InsE Location: 321 8098-321 8443 bp Feature: gene Location: 3218827-3219198 bp Feature: gene Location: 3219507-3220969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3219765-3219840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 9765-321 9840 bp Feature: gene Location: 3221050-3221508 bp Feature: domain Description: PHA02517 Location: 3221053-3221500 bp Feature: domain Description: PHA0251 7 Location: 3221 053-3221 500 bp Feature: gene Location: 3221729-3227464 bp Ori: AYV05814.1 Feature: domain Description: DUF4011 Location: 3221819-3222653 bp Feature: domain Description: DUF401 1 Location: 3221 81 9-3222653 bp Feature: domain Description: DEXXQc_SF1 Location: 3223010-3226112 bp Feature: domain Description: DEXXQc_SF1 Location: 322301 0-32261 1 2 bp Feature: domain Description: SF1_C_Upf1 Location: 3226121-3226649 bp Feature: domain Description: SF1 _C_Upf1 Location: 32261 21 -3226649 bp Feature: domain Description: MTES_1575 Location: 3226778-3227069 bp Feature: domain Description: MTES_1 575 Location: 3226778-3227069 bp Feature: gene Location: 3276636-3277543 bp Feature: gene Location: 3277818-3278291 bp Feature: domain Description: PHA02517 Location: 3277824-3278289 bp Feature: domain Description: PHA0251 7 Location: 3277824-3278289 bp Feature: gene Location: 3278381-3279889 bp Ori: AYV07187.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3278639-3279371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3278639-3279371 bp Feature: domain Description: GIIM Note: maturase Location: 3279446-3279644 bp Feature: domain Description: GIIM Note: maturase Location: 3279446-3279644 bp Feature: gene Location: 3280198-3280569 bp Feature: gene Location: 3280562-3281297 bp Feature: domain Description: InsE Location: 3280565-3280904 bp Feature: domain Description: InsE Location: 3280565-3280904 bp Feature: gene Location: 4023181-4023519 bp Feature: domain Description: Inovirus_Gp2 Location: 4023250-4023514 bp Feature: domain Description: Inovirus_Gp2 Location: 4023250-402351 4 bp Feature: gene Location: 4023562-4024035 bp Feature: domain Description: PHA02517 Location: 4023568-4024033 bp Feature: domain Description: PHA0251 7 Location: 4023568-4024033 bp Feature: gene Location: 4024125-4025633 bp Ori: AYV07218.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4024383-4025115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4024383-40251 1 5 bp Feature: domain Description: GIIM Note: maturase Location: 4025190-4025388 bp Feature: domain Description: GIIM Note: maturase Location: 40251 90-4025388 bp Feature: gene Location: 4025942-4026313 bp Feature: gene Location: 4026306-4027045 bp Feature: domain Description: InsE Location: 4026309-4026648 bp Feature: domain Description: InsE Location: 4026309-4026648 bp Feature: gene Location: 4388049-4388737 bp Feature: domain Description: InsE Location: 4388058-4388349 bp Feature: domain Description: InsE Location: 4388058-4388349 bp Feature: gene Location: 4388733-4389101 bp Feature: gene Location: 4389410-4390918 bp Ori: AYV07239.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4389668-4390400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4389668-4390400 bp Feature: domain Description: GIIM Note: maturase Location: 4390475-4390673 bp Feature: domain Description: GIIM Note: maturase Location: 4390475-4390673 bp Feature: gene Location: 4390999-4391487 bp Feature: domain Description: PHA02517 Location: 4391002-4391476 bp Feature: domain Description: PHA0251 7 Location: 4391 002-4391 476 bp Feature: gene Location: 4391887-4392069 bp Ori: AYV06784.1 Feature: domain Description: Phage_pRha Location: 4391956-4392043 bp Feature: domain Description: Phage_pRha Location: 4391 956-4392043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808)
MTES_1575 (pfam18741), Inovirus_Gp2 (pfam11726), Phage_pRha (pfam09669)

Seq: CP033511.1 Shigella flexneri strain 2016AM-0877 plasmid p2016AM-0877, complete sequence (222142 bp)
Overview 1 RT 1: 48102-50235 bp 2 RT 2: 59742-61750 bp 3 RT 3: 157056-159695 bp Neighborhood of RT #1 [48102, 50676] RVT-GII InsE Neighborhood of RT #2 [59742, 61750] OrfB_IS605 DDE_Tnp_IS66_C RVT-GII Tra5 Neighborhood of RT #3 [157056, 159712] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 48102-48524 bp Feature: gene Location: 48915-49093 bp Feature: gene Location: 49187-49426 bp Ori: AYV07297.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49193-49400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49193-49400 bp Feature: gene Location: 49621-49987 bp Feature: gene Location: 49989-50676 bp Feature: domain Description: InsE Location: 49992-50235 bp Feature: domain Description: InsE Location: 49992 -502 35 bp Feature: gene Location: 59742-59912 bp Feature: domain Description: OrfB_IS605 Location: 59748-59910 bp Feature: domain Description: OrfB_IS605 Location: 59748-59910 bp Feature: gene Location: 59991-60104 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 59994-60084 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 59994-60084 bp Feature: gene Location: 60238-61420 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60538-61087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60538-61087 bp Feature: gene Location: 61433-61651 bp Feature: domain Description: Tra5 Location: 61442-61634 bp Feature: domain Description: Tra5 Location: 61442 -61634 bp Feature: gene Location: 61670-61750 bp Feature: gene Location: 157056-157538 bp Feature: domain Description: COG3547 Location: 157074-157527 bp Feature: domain Description: COG3547 Location: 157074-15752 7 bp Feature: gene Location: 157568-157747 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 157613-157724 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 157613-15772 4 bp Feature: gene Location: 157830-159008 bp Ori: AYV07373.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157977-158631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157977-158631 bp Feature: domain Description: GIIM Note: maturase Location: 158709-158931 bp Feature: domain Description: GIIM Note: maturase Location: 158709-158931 bp Feature: gene Location: 159082-159536 bp Feature: gene Location: 159533-159712 bp Feature: domain Description: DDE_Tnp_IS66 Location: 159539-159695 bp Feature: domain Description: DDE_Tnp_IS66 Location: 159539-159695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), OrfB_IS605 (pfam01385), DDE_Tnp_IS66_C (pfam13817), Tra5 (COG2801), COG3547 (Transposase ), GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)