myRT

myRT report for GCA_003721455.1_ASM372145v1

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Seq: CP033575.1 Shewanella algae strain KC-Na-R1 chromosome, complete genome (5036300 bp)
Overview 1 RT 1: 1990855-1999189 bp 2 RT 2: 3730333-3734894 bp 3 RT 3: 4187262-4194865 bp Neighborhood of RT #1 [1990855, 1999200] HsdM PRK09737 RVT-UG1 nitrilase_Rim1_like COG3415 Neighborhood of RT #2 [3730333, 3734908] RVT-Retrons Acetyltransf_10 Neighborhood of RT #3 [4187262, 4194873] RVT-UG2 PRK12566 PRK01202 Feature: gene Location: 1990855-1992432 bp Ori: AYV13213.1 Feature: domain Description: HsdM Location: 1990861-1992418 bp Feature: domain Description: HsdM Location: 1 990861 -1 99241 8 bp Feature: gene Location: 1992429-1993781 bp Ori: AYV13214.1 Feature: domain Description: PRK09737 Location: 1992444-1993764 bp Feature: domain Description: PRK09737 Location: 1 992444-1 993764 bp Feature: gene Location: 1993820-1997494 bp Ori: AYV13215.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1994435-1994933 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 994435-1 994933 bp Feature: domain Description: nitrilase_Rim1_like Location: 1996886-1997201 bp Feature: domain Description: nitrilase_Rim1 _like Location: 1 996886-1 997201 bp Feature: gene Location: 1997639-1998592 bp Feature: gene Location: 1998808-1999200 bp Ori: AYV13217.1 Feature: domain Description: COG3415 Location: 1998817-1999189 bp Feature: domain Description: COG341 5 Location: 1 99881 7-1 9991 89 bp Feature: gene Location: 3730333-3731526 bp Feature: gene Location: 3731735-3732877 bp Ori: AYV14584.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3731972-3732602 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3731 972-3732602 bp Feature: gene Location: 3733039-3734034 bp Feature: gene Location: 3734456-3734908 bp Ori: AYV14586.1 Feature: domain Description: Acetyltransf_10 Location: 3734573-3734894 bp Feature: domain Description: Acetyltransf_1 0 Location: 3734573-3734894 bp Feature: gene Location: 4187262-4187870 bp Feature: gene Location: 4188392-4189324 bp Feature: gene Location: 4189621-4190907 bp Ori: AYV14946.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4189822-4190605 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 41 89822-41 90605 bp Feature: gene Location: 4191481-4194369 bp Ori: AYV14947.1 Feature: domain Description: PRK12566 Location: 4191496-4194364 bp Feature: domain Description: PRK1 2566 Location: 41 91 496-41 94364 bp Feature: gene Location: 4194484-4194873 bp Ori: AYV14948.1 Gene: gcvH Feature: domain Description: PRK01202 Location: 4194487-4194865 bp Feature: domain Description: PRK01 202 Location: 41 94487-41 94865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), PRK09737 (type I restriction-modification system specificity subunit), RVT-UG1, nitrilase_Rim1_like (cd07574), COG3415 (Transposase ), RVT-Retrons, Acetyltransf_10 (pfam13673), RVT-UG2, PRK12566 (glycine dehydrogenase; Provisional), PRK01202 (glycine cleavage system protein GcvH)

Seq: CP033574.1 Shewanella algae strain KC-Na-R1 plasmid pKC-Na-R1, complete sequence (167144 bp)
Overview 1 RT 1: 96561-101331 bp Neighborhood of RT #1 [96561, 101351] PRK13753 Multi_Drug_Res RVT-GII GIIM PRK13746 YbxI Feature: gene Location: 96561-97400 bp Ori: AYV11489.1 Gene: sul1 Feature: domain Description: PRK13753 Location: 96564-97398 bp Feature: domain Description: PRK13753 Location: 96564-97398 bp Feature: gene Location: 97394-97741 bp Ori: AYV11490.1 Feature: domain Description: Multi_Drug_Res Location: 97403-97676 bp Feature: domain Description: Multi_Drug_Res Location: 97403-97676 bp Feature: gene Location: 97940-99163 bp Ori: AYV11491.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98132-98750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98132 -98750 bp Feature: domain Description: GIIM Note: maturase Location: 98801-99014 bp Feature: domain Description: GIIM Note: maturase Location: 98801-99014 bp Feature: gene Location: 99743-100534 bp Ori: AYV11566.1 Gene: aadA1 Feature: domain Description: PRK13746 Location: 99746-100526 bp Feature: domain Description: PRK13746 Location: 99746-10052 6 bp Feature: gene Location: 100551-101351 bp Ori: AYV11492.1 Feature: domain Description: YbxI Location: 100593-101331 bp Feature: domain Description: YbxI Location: 100593-101331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13753 (dihydropteroate synthase; Provisional), Multi_Drug_Res (pfam00893), RVT-GII, GIIM (pfam08388), PRK13746 (aminoglycoside resistance protein; Provisional), YbxI (COG2602)