myRT

myRT report for GCA_003795105.1_ASM379510v1

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Seq: CP027768.1 Tetragenococcus halophilus strain LMG 26042 chromosome, complete genome (2695908 bp)
Overview 1 RT 1: 151-3874 bp 2 RT 2: 88863-96699 bp 3 RT 3: 135292-141791 bp 4 RT 4: 315146-317900 bp 5 RT 5: 593197-596367 bp 6 RT 6: 646849-651718 bp 7 RT 7: 760312-763911 bp 8 RT 8: 770469-774132 bp 9 RT 9: 960608-965321 bp 10 RT 10: 1227816-1234286 bp 11 RT 11: 1249972-1254463 bp 12 RT 12: 1405516-1409508 bp 13 RT 13: 1586545-1590870 bp 14 RT 14: 2294500-2299500 bp 15 RT 15: 2405892-2412770 bp Neighborhood of RT #1 [151, 3885] Usp RVT-GII GIIM HAD_Pase Neighborhood of RT #2 [88863, 96707] YfhO GlnA RVT-GII GIIM truA EcfT Neighborhood of RT #3 [135292, 141907] PRK05439 guaA RVT-GII GIIM DUF772 DDE_Tnp_1_2 Neighborhood of RT #4 [315146, 317900] RsmG GIIM RVT-GII Neighborhood of RT #5 [593197, 596381] RVT-GII GIIM MngR Neighborhood of RT #6 [646849, 651718] HATPase_AgrC-ComD-like LytT RVT-GII GIIM Neighborhood of RT #7 [760312, 763928] FmdA RVT-GII GIIM YidD thioredoxin Neighborhood of RT #8 [770469, 774134] UbiE DUF302 RVT-GII GIIM arc_metj RelE Neighborhood of RT #9 [960608, 965321] PfoR RVT-GII GIIM MFS_ExuT_GudP_like Neighborhood of RT #10 [1227816, 1234286] SsuE RVT-GII GIIM asn_synth_AEB Neighborhood of RT #11 [1249972, 1254705] PRK08618 RVT-GII GIIM MDR_like_2 DUF4336 Neighborhood of RT #12 [1405516, 1409508] TktA GIIM RVT-GII Neighborhood of RT #13 [1586545, 1590875] COG3464 RVT-GII GIIM PRK00215 Neighborhood of RT #14 [2294500, 2299544] CcmA RVT-GII GIIM lanti_2_LanM Neighborhood of RT #15 [2405892, 2413186] PRK05722 ileS RVT-GII GIIM DivIVA Feature: gene Location: 151-621 bp Ori: AYW51366.1 Feature: domain Description: Usp Location: 166-583 bp Feature: domain Description: Usp Location: 1 66-583 bp Feature: gene Location: 707-2005 bp Ori: AYW49017.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-1526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-1 526 bp Feature: domain Description: GIIM Note: maturase Location: 1583-1790 bp Feature: domain Description: GIIM Note: maturase Location: 1 583-1 790 bp Feature: gene Location: 2579-2969 bp Feature: gene Location: 3049-3885 bp Ori: AYW49018.1 Feature: domain Description: HAD_Pase Location: 3067-3874 bp Feature: domain Description: HAD_Pase Location: 3067-3874 bp Feature: gene Location: 88863-91451 bp Ori: AYW49087.1 Feature: domain Description: YfhO Location: 88911-91380 bp Feature: domain Description: YfhO Location: 8891 1 -91 380 bp Feature: gene Location: 91662-92999 bp Ori: AYW49088.1 Gene: glnA Feature: domain Description: GlnA Location: 91692-92991 bp Feature: domain Description: GlnA Location: 91 692-92991 bp Feature: gene Location: 93106-94404 bp Ori: AYW49089.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93307-93925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93307-93925 bp Feature: domain Description: GIIM Note: maturase Location: 93982-94189 bp Feature: domain Description: GIIM Note: maturase Location: 93982-941 89 bp Feature: gene Location: 94983-95726 bp Ori: AYW49090.1 Feature: domain Description: truA Location: 94986-95721 bp Feature: domain Description: truA Location: 94986-95721 bp Feature: gene Location: 95910-96707 bp Ori: AYW49091.1 Feature: domain Description: EcfT Location: 95928-96699 bp Feature: domain Description: EcfT Location: 95928-96699 bp Feature: gene Location: 135292-136215 bp Ori: AYW49143.1 Feature: domain Description: PRK05439 Location: 135298-136210 bp Feature: domain Description: PRK05439 Location: 1 35298-1 3621 0 bp Feature: gene Location: 136256-137821 bp Ori: AYW49144.1 Feature: domain Description: guaA Location: 136286-137819 bp Feature: domain Description: guaA Location: 1 36286-1 3781 9 bp Feature: gene Location: 138047-139345 bp Ori: AYW49145.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138248-138866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 38248-1 38866 bp Feature: domain Description: GIIM Note: maturase Location: 138923-139130 bp Feature: domain Description: GIIM Note: maturase Location: 1 38923-1 391 30 bp Feature: gene Location: 139522-139750 bp Feature: gene Location: 140477-141907 bp Ori: AYW49146.1 Feature: domain Description: DUF772 Location: 140642-140852 bp Feature: domain Description: DUF772 Location: 1 40642-1 40852 bp Feature: domain Description: DDE_Tnp_1_2 Location: 141527-141791 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 1 41 527-1 41 791 bp Feature: gene Location: 315146-315862 bp Ori: AYW49283.1 Feature: domain Description: RsmG Location: 315158-315803 bp Feature: domain Description: RsmG Location: 31 51 58-31 5803 bp Feature: gene Location: 316118-316483 bp Ori: AYW49284.1 Feature: domain Description: GIIM Note: maturase Location: 316124-316328 bp Feature: domain Description: GIIM Note: maturase Location: 31 61 24-31 6328 bp Feature: gene Location: 316528-317388 bp Ori: AYW49285.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316747-317362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 6747-31 7362 bp Feature: gene Location: 317459-317659 bp Feature: gene Location: 317823-317900 bp Feature: gene Location: 593197-593274 bp Feature: gene Location: 593438-593638 bp Feature: gene Location: 593709-594569 bp Ori: AYW49532.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593928-594543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593928-594543 bp Feature: gene Location: 594614-594979 bp Ori: AYW49533.1 Feature: domain Description: GIIM Note: maturase Location: 594620-594824 bp Feature: domain Description: GIIM Note: maturase Location: 594620-594824 bp Feature: gene Location: 595653-596381 bp Ori: AYW49534.1 Feature: domain Description: MngR Location: 595674-596367 bp Feature: domain Description: MngR Location: 595674-596367 bp Feature: gene Location: 646849-647829 bp Ori: AYW49573.1 Feature: domain Description: HATPase_AgrC-ComD-like Location: 647410-647809 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 64741 0-647809 bp Feature: gene Location: 647830-648591 bp Ori: AYW49574.1 Feature: domain Description: LytT Location: 647833-648553 bp Feature: domain Description: LytT Location: 647833-648553 bp Feature: gene Location: 649115-650413 bp Ori: AYW49575.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649316-649934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64931 6-649934 bp Feature: domain Description: GIIM Note: maturase Location: 649991-650198 bp Feature: domain Description: GIIM Note: maturase Location: 649991 -6501 98 bp Feature: gene Location: 650652-651106 bp Feature: gene Location: 651530-651718 bp Feature: gene Location: 760312-761262 bp Ori: AYW49670.1 Feature: domain Description: FmdA Location: 760336-761251 bp Feature: domain Description: FmdA Location: 760336-761 251 bp Feature: gene Location: 761314-761391 bp Feature: gene Location: 761819-763108 bp Ori: AYW49671.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762035-762650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762035-762650 bp Feature: domain Description: GIIM Note: maturase Location: 762710-762917 bp Feature: domain Description: GIIM Note: maturase Location: 76271 0-76291 7 bp Feature: gene Location: 763343-763627 bp Ori: AYW49672.1 Feature: domain Description: YidD Location: 763346-763586 bp Feature: domain Description: YidD Location: 763346-763586 bp Feature: gene Location: 763608-763928 bp Ori: AYW49673.1 Gene: trxA Feature: domain Description: thioredoxin Location: 763644-763911 bp Feature: domain Description: thioredoxin Location: 763644-76391 1 bp Feature: gene Location: 770469-771095 bp Ori: AYW49682.1 Feature: domain Description: UbiE Location: 770484-770955 bp Feature: domain Description: UbiE Location: 770484-770955 bp Feature: gene Location: 771322-771552 bp Feature: domain Description: DUF302 Location: 771325-771547 bp Feature: domain Description: DUF302 Location: 771 325-771 547 bp Feature: gene Location: 772134-773423 bp Ori: AYW51392.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772350-772965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772350-772965 bp Feature: domain Description: GIIM Note: maturase Location: 773025-773232 bp Feature: domain Description: GIIM Note: maturase Location: 773025-773232 bp Feature: gene Location: 773635-773868 bp Ori: AYW49683.1 Feature: domain Description: arc_metj Location: 773638-773731 bp Feature: domain Description: arc_metj Location: 773638-773731 bp Feature: gene Location: 773865-774134 bp Ori: AYW49684.1 Feature: domain Description: RelE Location: 773868-774132 bp Feature: domain Description: RelE Location: 773868-7741 32 bp Feature: gene Location: 960608-961644 bp Feature: domain Description: PfoR Location: 960620-961286 bp Feature: domain Description: PfoR Location: 960620-961 286 bp Feature: gene Location: 961712-961789 bp Feature: gene Location: 962217-963507 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962433-963048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962433-963048 bp Feature: domain Description: GIIM Note: maturase Location: 963108-963315 bp Feature: domain Description: GIIM Note: maturase Location: 9631 08-96331 5 bp Feature: gene Location: 963716-964927 bp Ori: AYW49840.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 963788-964913 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 963788-96491 3 bp Feature: gene Location: 965094-965321 bp Feature: gene Location: 1227816-1228367 bp Ori: AYW50070.1 Feature: domain Description: SsuE Location: 1227822-1228353 bp Feature: domain Description: SsuE Location: 1 227822-1 228353 bp Feature: gene Location: 1228985-1229602 bp Feature: gene Location: 1230349-1231647 bp Ori: AYW50072.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1230550-1231168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 230550-1 231 1 68 bp Feature: domain Description: GIIM Note: maturase Location: 1231225-1231432 bp Feature: domain Description: GIIM Note: maturase Location: 1 231 225-1 231 432 bp Feature: gene Location: 1231967-1233838 bp Ori: AYW50073.1 Gene: asnB Feature: domain Description: asn_synth_AEB Location: 1231979-1233611 bp Feature: domain Description: asn_synth_AEB Location: 1 231 979-1 23361 1 bp Feature: gene Location: 1233879-1234286 bp Feature: gene Location: 1249972-1250940 bp Ori: AYW50089.1 Feature: domain Description: PRK08618 Location: 1249981-1250935 bp Feature: domain Description: PRK0861 8 Location: 1 249981 -1 250935 bp Feature: gene Location: 1251083-1251311 bp Feature: gene Location: 1251488-1252786 bp Ori: AYW50090.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1251689-1252307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 251 689-1 252307 bp Feature: domain Description: GIIM Note: maturase Location: 1252364-1252571 bp Feature: domain Description: GIIM Note: maturase Location: 1 252364-1 252571 bp Feature: gene Location: 1253047-1253934 bp Ori: AYW50091.1 Feature: domain Description: MDR_like_2 Location: 1253050-1253926 bp Feature: domain Description: MDR_like_2 Location: 1 253050-1 253926 bp Feature: gene Location: 1253956-1254705 bp Ori: AYW50092.1 Feature: domain Description: DUF4336 Location: 1254046-1254463 bp Feature: domain Description: DUF4336 Location: 1 254046-1 254463 bp Feature: gene Location: 1405516-1407507 bp Ori: AYW50227.1 Gene: tkt Feature: domain Description: TktA Location: 1405531-1407502 bp Feature: domain Description: TktA Location: 1 405531 -1 407502 bp Feature: gene Location: 1407726-1408091 bp Ori: AYW50228.1 Feature: domain Description: GIIM Note: maturase Location: 1407732-1407936 bp Feature: domain Description: GIIM Note: maturase Location: 1 407732-1 407936 bp Feature: gene Location: 1408136-1408996 bp Ori: AYW50229.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1408355-1408970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 408355-1 408970 bp Feature: gene Location: 1409067-1409267 bp Feature: gene Location: 1409431-1409508 bp Feature: gene Location: 1586545-1587855 bp Ori: AYW50378.1 Feature: domain Description: COG3464 Location: 1586671-1587796 bp Feature: domain Description: COG3464 Location: 1 586671 -1 587796 bp Feature: gene Location: 1588070-1588147 bp Feature: gene Location: 1588575-1589864 bp Ori: AYW51429.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1588791-1589406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 588791 -1 589406 bp Feature: domain Description: GIIM Note: maturase Location: 1589466-1589673 bp Feature: domain Description: GIIM Note: maturase Location: 1 589466-1 589673 bp Feature: gene Location: 1589940-1590134 bp Feature: gene Location: 1590258-1590875 bp Ori: AYW50380.1 Feature: domain Description: PRK00215 Location: 1590276-1590870 bp Feature: domain Description: PRK0021 5 Location: 1 590276-1 590870 bp Feature: gene Location: 2294500-2295153 bp Feature: gene Location: 2295146-2295784 bp Ori: AYW51016.1 Feature: domain Description: CcmA Location: 2295158-2295761 bp Feature: domain Description: CcmA Location: 22951 58-2295761 bp Feature: gene Location: 2296156-2297445 bp Ori: AYW51017.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2296372-2296987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2296372-2296987 bp Feature: domain Description: GIIM Note: maturase Location: 2297047-2297254 bp Feature: domain Description: GIIM Note: maturase Location: 2297047-2297254 bp Feature: gene Location: 2297873-2297950 bp Feature: gene Location: 2298090-2299544 bp Ori: AYW51018.1 Feature: domain Description: lanti_2_LanM Location: 2298168-2299500 bp Feature: domain Description: lanti_2_LanM Location: 22981 68-2299500 bp Feature: gene Location: 2405892-2407412 bp Ori: AYW51108.1 Feature: domain Description: PRK05722 Location: 2405901-2407368 bp Feature: domain Description: PRK05722 Location: 2405901 -2407368 bp Feature: gene Location: 2407488-2410280 bp Ori: AYW51109.1 Feature: domain Description: ileS Location: 2407491-2410242 bp Feature: domain Description: ileS Location: 2407491 -241 0242 bp Feature: gene Location: 2410406-2411695 bp Ori: AYW51110.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2410622-2411237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 0622-241 1 237 bp Feature: domain Description: GIIM Note: maturase Location: 2411297-2411504 bp Feature: domain Description: GIIM Note: maturase Location: 241 1 297-241 1 504 bp Feature: gene Location: 2412123-2412200 bp Feature: gene Location: 2412425-2413186 bp Ori: AYW51111.1 Feature: domain Description: DivIVA Location: 2412434-2412770 bp Feature: domain Description: DivIVA Location: 241 2434-241 2770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Usp (pfam00582), RVT-GII, GIIM (pfam08388), HAD_Pase (cd16418), YfhO (pfam09586), GlnA (TIGR00653), truA (PRK00021), EcfT (COG0619), PRK05439 (pantothenate kinase; Provisional), guaA (PRK00074)
DUF772 (pfam05598), DDE_Tnp_1_2 (pfam13586), RsmG (COG0357), MngR (COG2188), HATPase_AgrC-ComD-like (cd16935), LytT (COG3279), FmdA (COG2421), YidD (COG0759), thioredoxin (TIGR01068), UbiE (COG2226)
DUF302 (pfam03625), arc_metj (LOAD_arc_metj), RelE (pfam06296), PfoR (COG3641), MFS_ExuT_GudP_like (cd17319), SsuE (COG0431), asn_synth_AEB (TIGR01536), PRK08618 (ornithine cyclodeaminase family protein), MDR_like_2 (cd05289), DUF4336 (pfam14234)
TktA (COG0021), COG3464 (Transposase ), PRK00215 (transcriptional repressor LexA), CcmA (COG4133), lanti_2_LanM (TIGR03897), PRK05722 (glucose-6-phosphate 1-dehydrogenase; Validated), ileS (TIGR00392), DivIVA (pfam05103)