myRT

myRT report for GCA_003795145.1_ASM379514v1

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Seq: CP027786.1 Tetragenococcus koreensis strain KCTC 3924 chromosome, complete genome (2720974 bp)
Overview 1 RT 1: 136345-140189 bp 2 RT 2: 534219-538952 bp 3 RT 3: 1264466-1268442 bp 4 RT 4: 1383523-1386097 bp 5 RT 5: 1617275-1621208 bp 6 RT 6: 1914452-1917532 bp 7 RT 7: 2384475-2391434 bp 8 RT 8: 2492496-2495426 bp 9 RT 9: 2521231-2524413 bp 10 RT 10: 2619787-2625014 bp Neighborhood of RT #1 [136345, 140377] RVT-GII GIIM MdoB Neighborhood of RT #2 [534219, 538960] YeaO RVT-GII GIIM thrS Neighborhood of RT #3 [1264466, 1268480] Peptidase_S66_mccF_like GATase1_PfpI_2 RVT-GII GIIM GATase1_PfpI_2 Neighborhood of RT #4 [1383523, 1386097] DapD_Ac GIIM RVT-GII Neighborhood of RT #5 [1617275, 1621208] RecG GIIM RVT-GII Neighborhood of RT #6 [1914452, 1917532] DDE_Tnp_1 GIIM RVT-GII Neighborhood of RT #7 [2384475, 2391499] DDE_5 UvrD_C RVT-AbiP2 COG4584 IstB_IS21 Neighborhood of RT #8 [2492496, 2495434] RVT-GII GIIM TBP_aldolase_IIB Neighborhood of RT #9 [2521231, 2524413] RVT-GII GIIM Neighborhood of RT #10 [2619787, 2625031] DDE_5 COG5659 RVT-GII GIIM FeuA FepC Feature: gene Location: 136345-136428 bp Feature: gene Location: 136592-136795 bp Feature: gene Location: 136866-137726 bp Ori: AYW44581.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137085-137700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37085-1 37700 bp Feature: gene Location: 137780-138136 bp Ori: AYW44582.1 Feature: domain Description: GIIM Note: maturase Location: 137786-137981 bp Feature: domain Description: GIIM Note: maturase Location: 1 37786-1 37981 bp Feature: gene Location: 138233-140377 bp Ori: AYW46794.1 Feature: domain Description: MdoB Location: 138260-140189 bp Feature: domain Description: MdoB Location: 1 38260-1 401 89 bp Feature: gene Location: 534219-534590 bp Ori: AYW44912.1 Feature: domain Description: YeaO Location: 534228-534573 bp Feature: domain Description: YeaO Location: 534228-534573 bp Feature: gene Location: 535317-535520 bp Feature: gene Location: 535591-536450 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535810-535924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53581 0-535924 bp Feature: gene Location: 536504-536860 bp Ori: AYW44913.1 Feature: domain Description: GIIM Note: maturase Location: 536510-536705 bp Feature: domain Description: GIIM Note: maturase Location: 53651 0-536705 bp Feature: gene Location: 537023-538960 bp Ori: AYW44914.1 Feature: domain Description: thrS Location: 537026-538952 bp Feature: domain Description: thrS Location: 537026-538952 bp Feature: gene Location: 1264466-1265539 bp Ori: AYW45546.1 Feature: domain Description: Peptidase_S66_mccF_like Location: 1264499-1265492 bp Feature: domain Description: Peptidase_S66_mccF_like Location: 1 264499-1 265492 bp Feature: gene Location: 1266005-1266382 bp Ori: AYW45547.1 Feature: domain Description: GATase1_PfpI_2 Location: 1266017-1266368 bp Feature: domain Description: GATase1 _PfpI_2 Location: 1 26601 7-1 266368 bp Feature: gene Location: 1266449-1267747 bp Ori: AYW45548.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1266650-1267268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 266650-1 267268 bp Feature: domain Description: GIIM Note: maturase Location: 1267325-1267532 bp Feature: domain Description: GIIM Note: maturase Location: 1 267325-1 267532 bp Feature: gene Location: 1267924-1268167 bp Feature: gene Location: 1268250-1268480 bp Feature: domain Description: GATase1_PfpI_2 Location: 1268253-1268442 bp Feature: domain Description: GATase1 _PfpI_2 Location: 1 268253-1 268442 bp Feature: gene Location: 1383523-1384224 bp Ori: AYW45646.1 Gene: dapD Feature: domain Description: DapD_Ac Location: 1383550-1384222 bp Feature: domain Description: DapD_Ac Location: 1 383550-1 384222 bp Feature: gene Location: 1384314-1384670 bp Ori: AYW45647.1 Feature: domain Description: GIIM Note: maturase Location: 1384320-1384515 bp Feature: domain Description: GIIM Note: maturase Location: 1 384320-1 38451 5 bp Feature: gene Location: 1384724-1385582 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1384943-1385057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 384943-1 385057 bp Feature: gene Location: 1385653-1385856 bp Feature: gene Location: 1386020-1386097 bp Feature: gene Location: 1617275-1619305 bp Ori: AYW46839.1 Feature: domain Description: RecG Location: 1617290-1619228 bp Feature: domain Description: RecG Location: 1 61 7290-1 61 9228 bp Feature: gene Location: 1619414-1619770 bp Ori: AYW45840.1 Feature: domain Description: GIIM Note: maturase Location: 1619420-1619615 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 9420-1 61 961 5 bp Feature: gene Location: 1619824-1620684 bp Ori: AYW45841.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1620043-1620658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 620043-1 620658 bp Feature: gene Location: 1620755-1620958 bp Feature: gene Location: 1621122-1621208 bp Feature: gene Location: 1914452-1915672 bp Ori: AYW46090.1 Feature: domain Description: DDE_Tnp_1 Location: 1914959-1915475 bp Feature: domain Description: DDE_Tnp_1 Location: 1 91 4959-1 91 5475 bp Feature: gene Location: 1915747-1916103 bp Ori: AYW46091.1 Feature: domain Description: GIIM Note: maturase Location: 1915753-1915948 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 5753-1 91 5948 bp Feature: gene Location: 1916157-1917017 bp Ori: AYW46092.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1916376-1916991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 6376-1 91 6991 bp Feature: gene Location: 1917088-1917291 bp Feature: gene Location: 1917455-1917532 bp Feature: gene Location: 2384475-2385833 bp Ori: AYW46481.1 Feature: domain Description: DDE_5 Location: 2384691-2385252 bp Feature: domain Description: DDE_5 Location: 2384691 -2385252 bp Feature: gene Location: 2386034-2386495 bp Ori: AYW46482.1 Feature: domain Description: UvrD_C Location: 2386214-2386418 bp Feature: domain Description: UvrD_C Location: 238621 4-238641 8 bp Feature: gene Location: 2386725-2388269 bp Ori: AYW46871.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2387121-2387583 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23871 21 -2387583 bp Feature: gene Location: 2389195-2390748 bp Ori: AYW46483.1 Feature: domain Description: COG4584 Location: 2389360-2390023 bp Feature: domain Description: COG4584 Location: 2389360-2390023 bp Feature: gene Location: 2390726-2391499 bp Ori: AYW46484.1 Feature: domain Description: IstB_IS21 Location: 2390915-2391434 bp Feature: domain Description: IstB_IS21 Location: 239091 5-2391 434 bp Feature: gene Location: 2492496-2492573 bp Feature: gene Location: 2492737-2492940 bp Feature: gene Location: 2493011-2493871 bp Ori: AYW46566.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2493230-2493845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2493230-2493845 bp Feature: gene Location: 2493925-2494281 bp Ori: AYW46567.1 Feature: domain Description: GIIM Note: maturase Location: 2493931-2494126 bp Feature: domain Description: GIIM Note: maturase Location: 2493931 -24941 26 bp Feature: gene Location: 2494577-2495434 bp Ori: AYW46568.1 Feature: domain Description: TBP_aldolase_IIB Location: 2494601-2495426 bp Feature: domain Description: TBP_aldolase_IIB Location: 2494601 -2495426 bp Feature: gene Location: 2521231-2521308 bp Feature: gene Location: 2521472-2521675 bp Feature: gene Location: 2521746-2522606 bp Ori: AYW46595.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2521965-2522580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2521 965-2522580 bp Feature: gene Location: 2522660-2523016 bp Ori: AYW46596.1 Feature: domain Description: GIIM Note: maturase Location: 2522666-2522861 bp Feature: domain Description: GIIM Note: maturase Location: 2522666-2522861 bp Feature: gene Location: 2523121-2524413 bp Feature: gene Location: 2619787-2621154 bp Ori: AYW46686.1 Feature: domain Description: DDE_5 Location: 2620006-2620591 bp Feature: domain Description: DDE_5 Location: 2620006-2620591 bp Feature: domain Description: COG5659 Location: 2620783-2620933 bp Feature: domain Description: COG5659 Location: 2620783-2620933 bp Feature: gene Location: 2621368-2621596 bp Feature: gene Location: 2621773-2623071 bp Ori: AYW46687.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2621974-2622592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2621 974-2622592 bp Feature: domain Description: GIIM Note: maturase Location: 2622649-2622856 bp Feature: domain Description: GIIM Note: maturase Location: 2622649-2622856 bp Feature: gene Location: 2623154-2624092 bp Ori: AYW46688.1 Feature: domain Description: FeuA Location: 2623298-2624042 bp Feature: domain Description: FeuA Location: 2623298-2624042 bp Feature: gene Location: 2624246-2625031 bp Ori: AYW46689.1 Feature: domain Description: FepC Location: 2624255-2625014 bp Feature: domain Description: FepC Location: 2624255-262501 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MdoB (COG1368), YeaO (COG3189), thrS (TIGR00418), Peptidase_S66_mccF_like (cd07062), GATase1_PfpI_2 (cd03139), DapD_Ac (TIGR03532), RecG (COG1200), DDE_Tnp_1 (pfam01609)
DDE_5 (pfam13546), UvrD_C (pfam13361), RVT-AbiP2, COG4584 (Transposase ), IstB_IS21 (pfam01695), TBP_aldolase_IIB (cd00947), COG5659 (SRSO17 transposase ), FeuA (cd01138), FepC (COG1120)