myRT

myRT report for GCA_003812165.1_ASM381216v1

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Seq: CP033771.1 Pseudomonas aeruginosa strain FDAARGOS_532 chromosome, complete genome (6928914 bp)
Overview 1 RT 1: 5456868-5467174 bp 2 RT 2: 5483432-5491614 bp Neighborhood of RT #1 [5456868, 5467176] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [5483432, 5491628] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 5456868-5457989 bp Ori: AYY40905.1 Feature: domain Description: COG3177 Location: 5456886-5457978 bp Feature: domain Description: COG31 77 Location: 5456886-5457978 bp Feature: gene Location: 5458248-5458385 bp Feature: gene Location: 5458713-5460398 bp Ori: AYY40907.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5458770-5459010 bp Feature: domain Description: RVT_N Location: 5458770-545901 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5459058-5459694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5459058-5459694 bp Feature: domain Description: GIIM Note: maturase Location: 5459748-5459979 bp Feature: domain Description: GIIM Note: maturase Location: 5459748-5459979 bp Feature: domain Description: HNH Note: nucleases Location: 5460231-5460369 bp Feature: domain Description: HNH Note: nucleases Location: 5460231 -5460369 bp Feature: gene Location: 5461479-5465216 bp Ori: AYY40908.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5461587-5462244 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5461 587-5462244 bp Feature: domain Description: PRK09776 Location: 5462457-5462928 bp Feature: domain Description: PRK09776 Location: 5462457-5462928 bp Feature: domain Description: PAS Location: 5462985-5463510 bp Feature: domain Description: PAS Location: 5462985-546351 0 bp Feature: domain Description: PRK10060 Location: 5463519-5465166 bp Feature: domain Description: PRK1 0060 Location: 546351 9-54651 66 bp Feature: gene Location: 5465323-5467176 bp Ori: AYY40909.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 5465335-5467174 bp Feature: domain Description: PRK05658 Location: 5465335-54671 74 bp Feature: gene Location: 5483432-5484724 bp Ori: AYY40926.1 Feature: domain Description: PRK10770 Location: 5483522-5484716 bp Feature: domain Description: PRK1 0770 Location: 5483522-548471 6 bp Feature: gene Location: 5484705-5487494 bp Ori: AYY40927.1 Feature: domain Description: LptD Location: 5484900-5487480 bp Feature: domain Description: LptD Location: 5484900-5487480 bp Feature: gene Location: 5487627-5489339 bp Ori: AYY40928.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5487684-5487927 bp Feature: domain Description: RVT_N Location: 5487684-5487927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5487972-5488608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5487972-5488608 bp Feature: domain Description: YkfC Location: 5488815-5488968 bp Feature: domain Description: YkfC Location: 548881 5-5488968 bp Feature: domain Description: HNH Note: nucleases Location: 5489145-5489283 bp Feature: domain Description: HNH Note: nucleases Location: 54891 45-5489283 bp Feature: gene Location: 5489527-5489739 bp Feature: gene Location: 5490612-5491628 bp Ori: AYY40930.1 Feature: domain Description: COG3178 Location: 5490615-5491614 bp Feature: domain Description: COG31 78 Location: 549061 5-5491 61 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )