myRT

myRT report for GCA_003812625.1_ASM381262v1

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Seq: CP033762.1 Escherichia coli strain FDAARGOS_536 chromosome, complete genome (4977723 bp)
Overview 1 RT 1: 1987434-1990568 bp 2 RT 2: 2698818-2703101 bp 3 RT 3: 4406619-4410094 bp 4 RT 4: 4720947-4727292 bp Neighborhood of RT #1 [1987434, 1990567] HTH_38 Tra8 InsE RVT-GII IS285 RAYT Neighborhood of RT #2 [2698818, 2703109] RVT-GII RVT-GII GIIM YesM Neighborhood of RT #3 [4406619, 4410099] DUF4094 Peptidase_S74 RVT-UG17 SLATT_5 PRK10597 Neighborhood of RT #4 [4720947, 4727600] RVT-GII GIIM DDE_Tnp_1_assoc VgrG Feature: gene Location: 1987434-1988585 bp Ori: AYY93161.1 Feature: domain Description: HTH_38 Location: 1987443-1987557 bp Feature: domain Description: HTH_38 Location: 1 987443-1 987557 bp Feature: domain Description: Tra8 Location: 1987593-1988574 bp Feature: domain Description: Tra8 Location: 1 987593-1 988574 bp Feature: gene Location: 1988542-1988910 bp Ori: AYY93162.1 Feature: domain Description: InsE Location: 1988545-1988836 bp Feature: domain Description: InsE Location: 1 988545-1 988836 bp Feature: gene Location: 1989165-1989627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1989177-1989369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9891 77-1 989369 bp Feature: gene Location: 1989770-1990437 bp Feature: domain Description: IS285 Location: 1989800-1990178 bp Feature: domain Description: IS285 Location: 1 989800-1 9901 78 bp Feature: gene Location: 1990445-1990567 bp Feature: domain Description: RAYT Location: 1990448-1990568 bp Feature: domain Description: RAYT Location: 1 990448-1 990568 bp Feature: gene Location: 2698818-2699723 bp Feature: gene Location: 2699697-2699984 bp Feature: gene Location: 2700209-2700600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2700539-2700599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2700539-2700599 bp Feature: gene Location: 2700776-2701297 bp Ori: AYY93766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2700782-2701064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2700782-2701 064 bp Feature: domain Description: GIIM Note: maturase Location: 2701112-2701292 bp Feature: domain Description: GIIM Note: maturase Location: 2701 1 1 2-2701 292 bp Feature: gene Location: 2701619-2701807 bp Feature: gene Location: 2701880-2703109 bp Ori: AYY93768.1 Feature: domain Description: YesM Location: 2702360-2703101 bp Feature: domain Description: YesM Location: 2702360-27031 01 bp Feature: gene Location: 4406619-4407323 bp Ori: AYY95300.1 Feature: domain Description: DUF4094 Location: 4406661-4406751 bp Feature: domain Description: DUF4094 Location: 4406661 -4406751 bp Feature: domain Description: Peptidase_S74 Location: 4406967-4407126 bp Feature: domain Description: Peptidase_S74 Location: 4406967-44071 26 bp Feature: gene Location: 4407334-4407621 bp Feature: gene Location: 4407729-4409099 bp Ori: AYY95302.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4407957-4408563 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4407957-4408563 bp Feature: gene Location: 4409077-4409628 bp Ori: AYY95303.1 Feature: domain Description: SLATT_5 Location: 4409083-4409599 bp Feature: domain Description: SLATT_5 Location: 4409083-4409599 bp Feature: gene Location: 4409851-4410099 bp Ori: AYY95304.1 Feature: domain Description: PRK10597 Location: 4409854-4410094 bp Feature: domain Description: PRK1 0597 Location: 4409854-441 0094 bp Feature: gene Location: 4720947-4721843 bp Feature: gene Location: 4721892-4722521 bp Feature: gene Location: 4723142-4724464 bp Ori: AYY95567.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4723418-4724075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472341 8-4724075 bp Feature: domain Description: GIIM Note: maturase Location: 4724165-4724372 bp Feature: domain Description: GIIM Note: maturase Location: 47241 65-4724372 bp Feature: gene Location: 4724764-4725599 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4724767-4724953 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 4724767-4724953 bp Feature: gene Location: 4725618-4727600 bp Ori: AYY95568.1 Gene: tssI Feature: domain Description: VgrG Location: 4725633-4727292 bp Feature: domain Description: VgrG Location: 4725633-4727292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), InsE (COG2963), RVT-GII, IS285 (COG3328), RAYT (COG1943), GIIM (pfam08388), YesM (COG2972), DUF4094 (pfam13334), Peptidase_S74 (pfam13884)
RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional), DDE_Tnp_1_assoc (pfam13808), VgrG (COG3501)