myRT

myRT report for GCA_003812945.1_ASM381294v1

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Seq: CP033850.1 Escherichia coli strain FDAARGOS_497 chromosome, complete genome (5231450 bp)
Overview 1 RT 1: 537457-540512 bp 2 RT 2: 1326079-1329958 bp 3 RT 3: 4603249-4607249 bp 4 RT 4: 5155189-5160417 bp Neighborhood of RT #1 [537457, 540512] RVT-GII RVT-GII GIIM Neighborhood of RT #2 [1326079, 1329963] dut slmA RVT-Retrons pyrE rph Neighborhood of RT #3 [4603249, 4607257] DcuC RVT-GII RVT-GII Asparaginase_2 Neighborhood of RT #4 [5155189, 5160425] TmcA YpfJ RVT_N RVT-GII GIIM HNHc Zn_peptidase Feature: gene Location: 537457-538362 bp Feature: gene Location: 538336-538623 bp Feature: gene Location: 538848-539239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539178-539238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5391 78-539238 bp Feature: gene Location: 539415-539936 bp Ori: AYZ39097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539421-539703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539421 -539703 bp Feature: domain Description: GIIM Note: maturase Location: 539751-539931 bp Feature: domain Description: GIIM Note: maturase Location: 539751 -539931 bp Feature: gene Location: 540035-540214 bp Feature: gene Location: 540324-540512 bp Feature: gene Location: 1326079-1326534 bp Ori: AYZ43300.1 Feature: domain Description: dut Location: 1326082-1326529 bp Feature: domain Description: dut Location: 1 326082-1 326529 bp Feature: gene Location: 1326641-1327237 bp Ori: AYZ39808.1 Gene: slmA Feature: domain Description: slmA Location: 1326647-1327223 bp Feature: domain Description: slmA Location: 1 326647-1 327223 bp Feature: gene Location: 1327283-1328242 bp Ori: AYZ39809.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1327418-1327967 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 32741 8-1 327967 bp Feature: gene Location: 1328540-1329181 bp Ori: AYZ39810.1 Feature: domain Description: pyrE Location: 1328543-1329176 bp Feature: domain Description: pyrE Location: 1 328543-1 3291 76 bp Feature: gene Location: 1329247-1329963 bp Ori: AYZ39811.1 Feature: domain Description: rph Location: 1329250-1329958 bp Feature: domain Description: rph Location: 1 329250-1 329958 bp Feature: gene Location: 4603249-4604610 bp Ori: AYZ42703.1 Feature: domain Description: DcuC Location: 4603252-4604584 bp Feature: domain Description: DcuC Location: 4603252-4604584 bp Feature: gene Location: 4604663-4604890 bp Feature: gene Location: 4605256-4605702 bp Ori: AYZ42704.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4605562-4605664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4605562-4605664 bp Feature: gene Location: 4605654-4605818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4605657-4605813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4605657-460581 3 bp Feature: gene Location: 4605845-4606068 bp Feature: gene Location: 4606226-4607257 bp Ori: AYZ42705.1 Feature: domain Description: Asparaginase_2 Location: 4606316-4607249 bp Feature: domain Description: Asparaginase_2 Location: 460631 6-4607249 bp Feature: gene Location: 5155189-5157204 bp Ori: AYZ43180.1 Feature: domain Description: TmcA Location: 5155195-5157202 bp Feature: domain Description: TmcA Location: 51 551 95-51 57202 bp Feature: gene Location: 5157219-5157530 bp Feature: domain Description: YpfJ Location: 5157222-5157525 bp Feature: domain Description: YpfJ Location: 51 57222-51 57525 bp Feature: gene Location: 5157612-5159279 bp Ori: AYZ43181.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5157660-5157897 bp Feature: domain Description: RVT_N Location: 51 57660-51 57897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5157948-5158590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 57948-51 58590 bp Feature: domain Description: GIIM Note: maturase Location: 5158641-5158875 bp Feature: domain Description: GIIM Note: maturase Location: 51 58641 -51 58875 bp Feature: domain Description: HNHc Note: nucleases Location: 5159085-5159244 bp Feature: domain Description: HNHc Note: nucleases Location: 51 59085-51 59244 bp Feature: gene Location: 5159321-5159500 bp Feature: gene Location: 5159856-5160425 bp Feature: domain Description: Zn_peptidase Location: 5159859-5160417 bp Feature: domain Description: Zn_peptidase Location: 51 59859-51 6041 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), DcuC (TIGR00771), Asparaginase_2 (pfam01112), TmcA (COG1444)
YpfJ (COG2321), RVT_N (pfam13655), HNHc (smart00507), Zn_peptidase (pfam04228)

Seq: CP033847.1 Escherichia coli strain FDAARGOS_497 plasmid unnamed1, complete sequence (143865 bp)
Overview 1 RT 1: 117798-121362 bp 2 RT 2: 123477-129401 bp Neighborhood of RT #1 [117798, 121362] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [123477, 129401] AdoMet_MTases RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII GIIM HNHc Feature: gene Location: 117798-118220 bp Ori: AYZ38438.1 Feature: domain Description: DUF1380 Location: 117801-118098 bp Feature: domain Description: DUF1380 Location: 117801-118098 bp Feature: gene Location: 118217-118408 bp Feature: gene Location: 118722-120389 bp Ori: AYZ38440.1 Gene: ltrA Feature: domain Description: RVT_N Location: 118770-119007 bp Feature: domain Description: RVT_N Location: 118770-119007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119058-119700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119058-119700 bp Feature: domain Description: GIIM Note: maturase Location: 119751-119985 bp Feature: domain Description: GIIM Note: maturase Location: 119751-119985 bp Feature: domain Description: HNHc Note: nucleases Location: 120195-120354 bp Feature: domain Description: HNHc Note: nucleases Location: 12 0195-12 0354 bp Feature: gene Location: 120431-120610 bp Feature: gene Location: 121171-121362 bp Feature: gene Location: 123477-124040 bp Ori: AYZ38444.1 Feature: domain Description: AdoMet_MTases Location: 123639-123939 bp Feature: domain Description: AdoMet_MTases Location: 12 3639-12 3939 bp Feature: gene Location: 124021-124439 bp Feature: gene Location: 124417-126084 bp Ori: AYZ38445.1 Gene: ltrA Feature: domain Description: RVT_N Location: 124465-124702 bp Feature: domain Description: RVT_N Location: 12 4465-12 4702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124753-125395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 4753-12 5395 bp Feature: domain Description: GIIM Note: maturase Location: 125446-125680 bp Feature: domain Description: GIIM Note: maturase Location: 12 5446-12 5680 bp Feature: domain Description: HNHc Note: nucleases Location: 125890-126049 bp Feature: domain Description: HNHc Note: nucleases Location: 12 5890-12 6049 bp Feature: gene Location: 126126-126305 bp Feature: gene Location: 126534-126782 bp Feature: gene Location: 126760-128427 bp Ori: AYZ38447.1 Gene: ltrA Feature: domain Description: RVT_N Location: 126808-127045 bp Feature: domain Description: RVT_N Location: 12 6808-12 7045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127096-127738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 7096-12 7738 bp Feature: domain Description: GIIM Note: maturase Location: 127789-128023 bp Feature: domain Description: GIIM Note: maturase Location: 12 7789-12 802 3 bp Feature: domain Description: HNHc Note: nucleases Location: 128233-128392 bp Feature: domain Description: HNHc Note: nucleases Location: 12 82 33-12 8392 bp Feature: gene Location: 128469-128648 bp Feature: gene Location: 129208-129401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173)