myRT

myRT report for GCA_003813005.1_ASM381300v1

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Seq: CP033832.1 Pseudomonas aeruginosa strain FDAARGOS_505 chromosome, complete genome (7029824 bp)
Overview 1 RT 1: 2167285-2177591 bp 2 RT 2: 2193849-2202030 bp Neighborhood of RT #1 [2167285, 2177593] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [2193849, 2202044] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 2167285-2168406 bp Ori: AYZ76725.1 Feature: domain Description: COG3177 Location: 2167303-2168395 bp Feature: domain Description: COG31 77 Location: 21 67303-21 68395 bp Feature: gene Location: 2168665-2168802 bp Feature: gene Location: 2169130-2170815 bp Ori: AYZ76727.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2169187-2169427 bp Feature: domain Description: RVT_N Location: 21 691 87-21 69427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2169475-2170111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 69475-21 701 1 1 bp Feature: domain Description: GIIM Note: maturase Location: 2170165-2170396 bp Feature: domain Description: GIIM Note: maturase Location: 21 701 65-21 70396 bp Feature: domain Description: HNH Note: nucleases Location: 2170648-2170786 bp Feature: domain Description: HNH Note: nucleases Location: 21 70648-21 70786 bp Feature: gene Location: 2171896-2175633 bp Ori: AYZ76728.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 2172004-2172661 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 21 72004-21 72661 bp Feature: domain Description: PRK09776 Location: 2172874-2173345 bp Feature: domain Description: PRK09776 Location: 21 72874-21 73345 bp Feature: domain Description: PAS Location: 2173402-2173927 bp Feature: domain Description: PAS Location: 21 73402-21 73927 bp Feature: domain Description: PRK10060 Location: 2173936-2175583 bp Feature: domain Description: PRK1 0060 Location: 21 73936-21 75583 bp Feature: gene Location: 2175740-2177593 bp Ori: AYZ76729.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 2175752-2177591 bp Feature: domain Description: PRK05658 Location: 21 75752-21 77591 bp Feature: gene Location: 2193849-2195141 bp Ori: AYZ76747.1 Feature: domain Description: PRK10770 Location: 2193939-2195133 bp Feature: domain Description: PRK1 0770 Location: 21 93939-21 951 33 bp Feature: gene Location: 2195122-2197911 bp Ori: AYZ76748.1 Feature: domain Description: LptD Location: 2195317-2197897 bp Feature: domain Description: LptD Location: 21 9531 7-21 97897 bp Feature: gene Location: 2198044-2199756 bp Ori: AYZ76749.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2198101-2198344 bp Feature: domain Description: RVT_N Location: 21 981 01 -21 98344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2198389-2199022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 98389-21 99022 bp Feature: domain Description: YkfC Location: 2199235-2199385 bp Feature: domain Description: YkfC Location: 21 99235-21 99385 bp Feature: domain Description: HNH Note: nucleases Location: 2199562-2199700 bp Feature: domain Description: HNH Note: nucleases Location: 21 99562-21 99700 bp Feature: gene Location: 2199943-2200155 bp Feature: gene Location: 2201028-2202044 bp Ori: AYZ76751.1 Feature: domain Description: COG3178 Location: 2201031-2202030 bp Feature: domain Description: COG31 78 Location: 2201 031 -2202030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )