myRT

myRT report for GCA_003850185.1_ASM385018v1

Download annotations/find similar RTs

Seq: CP033937.1 Piscirickettsia salmonis strain EM-90 chromosome, complete genome (3178181 bp)
Overview 1 RT 1: 920591-923265 bp 2 RT 2: 1013037-1016208 bp 3 RT 3: 1149147-1153339 bp 4 RT 4: 1321919-1326409 bp 5 RT 5: 1451128-1455345 bp 6 RT 6: 1813700-1818511 bp 7 RT 7: 1972931-1976082 bp 8 RT 8: 3153116-3156053 bp Neighborhood of RT #1 [920591, 923265] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1013037, 1016208] MDR_like_2 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #3 [1149147, 1153398] MFS_DtpA_like Y2_Tnp RVT-GII HTH_Tnp_1 Neighborhood of RT #4 [1321919, 1326409] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1451128, 1455377] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII HTH_21 Tra5 Neighborhood of RT #6 [1813700, 1818522] DDE_3 HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [1972931, 1976093] InsE PHA02517 RVT-CRISPR-like RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #8 [3153116, 3156053] RVT-GII Feature: gene Location: 920591-921055 bp Feature: domain Description: DDE_3 Location: 920594-920978 bp Feature: domain Description: DDE_3 Location: 920594-920978 bp Feature: gene Location: 921112-921477 bp Feature: domain Description: HTH_Tnp_IS630 Location: 921127-921466 bp Feature: domain Description: HTH_Tnp_IS630 Location: 921 1 27-921 466 bp Feature: gene Location: 921562-922152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921577-921793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921 577-921 793 bp Feature: gene Location: 922254-922718 bp Feature: domain Description: Zn_Tnp_IS91 Location: 922293-922563 bp Feature: domain Description: Zn_Tnp_IS91 Location: 922293-922563 bp Feature: gene Location: 922738-923265 bp Feature: gene Location: 1013037-1013999 bp Feature: domain Description: MDR_like_2 Location: 1013040-1013979 bp Feature: domain Description: MDR_like_2 Location: 1 01 3040-1 01 3979 bp Feature: gene Location: 1014178-1014372 bp Feature: gene Location: 1014587-1015408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014635-1015031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 4635-1 01 5031 bp Feature: gene Location: 1015493-1015894 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1015505-1015739 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 01 5505-1 01 5739 bp Feature: gene Location: 1016053-1016208 bp Feature: gene Location: 1149147-1149689 bp Feature: domain Description: MFS_DtpA_like Location: 1149171-1149660 bp Feature: domain Description: MFS_DtpA_like Location: 1 1 491 71 -1 1 49660 bp Feature: gene Location: 1149915-1150730 bp Feature: domain Description: Y2_Tnp Location: 1150002-1150500 bp Feature: domain Description: Y2_Tnp Location: 1 1 50002-1 1 50500 bp Feature: gene Location: 1151111-1152097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1151393-1152071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 51 393-1 1 52071 bp Feature: gene Location: 1152949-1153125 bp Feature: gene Location: 1153126-1153398 bp Feature: domain Description: HTH_Tnp_1 Location: 1153135-1153339 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 531 35-1 1 53339 bp Feature: gene Location: 1321919-1322476 bp Feature: gene Location: 1322599-1323063 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1322638-1322908 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 322638-1 322908 bp Feature: gene Location: 1323165-1324487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1323447-1324128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 323447-1 3241 28 bp Feature: gene Location: 1324896-1325711 bp Feature: domain Description: Y2_Tnp Location: 1324983-1325484 bp Feature: domain Description: Y2_Tnp Location: 1 324983-1 325484 bp Feature: gene Location: 1325873-1326409 bp Feature: gene Location: 1451128-1451865 bp Feature: domain Description: beta_CA_cladeB Location: 1451251-1451827 bp Feature: domain Description: beta_CA_cladeB Location: 1 451 251 -1 451 827 bp Feature: gene Location: 1452312-1452812 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1452384-1452657 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 452384-1 452657 bp Feature: gene Location: 1452914-1454116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1453076-1453757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 453076-1 453757 bp Feature: gene Location: 1454222-1454458 bp Feature: gene Location: 1454541-1455377 bp Feature: domain Description: HTH_21 Location: 1454664-1454817 bp Feature: domain Description: HTH_21 Location: 1 454664-1 45481 7 bp Feature: domain Description: Tra5 Location: 1454865-1455345 bp Feature: domain Description: Tra5 Location: 1 454865-1 455345 bp Feature: gene Location: 1813700-1814164 bp Feature: domain Description: DDE_3 Location: 1813703-1814087 bp Feature: domain Description: DDE_3 Location: 1 81 3703-1 81 4087 bp Feature: gene Location: 1814354-1814779 bp Feature: domain Description: HTH_Tnp_1 Location: 1814459-1814690 bp Feature: domain Description: HTH_Tnp_1 Location: 1 81 4459-1 81 4690 bp Feature: gene Location: 1814816-1815433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1814819-1815230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 481 9-1 81 5230 bp Feature: gene Location: 1815511-1816254 bp Feature: domain Description: PHA02517 Location: 1815523-1816240 bp Feature: domain Description: PHA0251 7 Location: 1 81 5523-1 81 6240 bp Feature: gene Location: 1816371-1816664 bp Feature: domain Description: InsE Location: 1816377-1816656 bp Feature: domain Description: InsE Location: 1 81 6377-1 81 6656 bp Feature: gene Location: 1816624-1817163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1816840-1817068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 6840-1 81 7068 bp Feature: gene Location: 1817638-1818135 bp Feature: domain Description: Y2_Tnp Location: 1817725-1818097 bp Feature: domain Description: Y2_Tnp Location: 1 81 7725-1 81 8097 bp Feature: gene Location: 1818157-1818522 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1818172-1818511 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 81 81 72-1 81 851 1 bp Feature: gene Location: 1972931-1973122 bp Feature: domain Description: InsE Location: 1972934-1973114 bp Feature: domain Description: InsE Location: 1 972934-1 9731 1 4 bp Feature: gene Location: 1973170-1973982 bp Feature: domain Description: PHA02517 Location: 1973185-1973968 bp Feature: domain Description: PHA0251 7 Location: 1 9731 85-1 973968 bp Feature: gene Location: 1973991-1974131 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1973994-1974117 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 973994-1 9741 1 7 bp Feature: gene Location: 1974408-1974968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1974690-1974939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 974690-1 974939 bp Feature: gene Location: 1975377-1975706 bp Feature: domain Description: Y2_Tnp Location: 1975464-1975611 bp Feature: domain Description: Y2_Tnp Location: 1 975464-1 97561 1 bp Feature: gene Location: 1975728-1976093 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1975743-1976082 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 975743-1 976082 bp Feature: gene Location: 3153116-3153367 bp Feature: gene Location: 3153442-3153684 bp Feature: gene Location: 3153786-3155105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3154068-3154746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 54068-31 54746 bp Feature: gene Location: 3155211-3155393 bp Feature: gene Location: 3155802-3156053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MDR_like_2 (cd05289), MFS_DtpA_like (cd17346), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527), beta_CA_cladeB (cd00884), HTH_21 (pfam13276)
Tra5 (COG2801), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-CRISPR

Seq: CP033942.1 Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-5, complete sequence (167750 bp)
Overview 1 RT 1: 4017-6929 bp 2 RT 2: 50774-54153 bp 3 RT 3: 64933-69382 bp 4 RT 4: 157798-160710 bp Neighborhood of RT #1 [4017, 6943] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [50774, 54167] Y2_Tnp Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [64933, 69612] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Neighborhood of RT #4 [157798, 160724] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Feature: gene Location: 4017-4481 bp Feature: domain Description: DDE_3 Location: 4020-4404 bp Feature: domain Description: DDE_3 Location: 402 0-4404 bp Feature: gene Location: 4538-4903 bp Feature: domain Description: HTH_Tnp_IS630 Location: 4553-4892 bp Feature: domain Description: HTH_Tnp_IS630 Location: 4553-4892 bp Feature: gene Location: 5003-6019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5006-5660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5006-5660 bp Feature: gene Location: 6121-6585 bp Feature: domain Description: Zn_Tnp_IS91 Location: 6160-6430 bp Feature: domain Description: Zn_Tnp_IS91 Location: 6160-6430 bp Feature: gene Location: 6605-6943 bp Feature: domain Description: major_cap_HK97 Location: 6668-6929 bp Feature: domain Description: major_cap_HK97 Location: 6668-692 9 bp Feature: gene Location: 50774-51106 bp Feature: domain Description: Y2_Tnp Location: 50792-50876 bp Feature: domain Description: Y2 _Tnp Location: 50792 -50876 bp Feature: gene Location: 51353-51877 bp Feature: domain Description: Y2_Tnp Location: 51440-51836 bp Feature: domain Description: Y2 _Tnp Location: 51440-51836 bp Feature: gene Location: 52286-52993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52568-52958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 568-52 958 bp Feature: gene Location: 53014-53307 bp Feature: domain Description: InsE Location: 53020-53299 bp Feature: domain Description: InsE Location: 5302 0-532 99 bp Feature: gene Location: 53355-54167 bp Feature: domain Description: PHA02517 Location: 53370-54153 bp Feature: domain Description: PHA02 517 Location: 53370-54153 bp Feature: gene Location: 64933-65433 bp Feature: domain Description: Zn_Tnp_IS91 Location: 65005-65278 bp Feature: domain Description: Zn_Tnp_IS91 Location: 65005-652 78 bp Feature: gene Location: 65861-66604 bp Feature: domain Description: PHA02517 Location: 65873-66590 bp Feature: domain Description: PHA02 517 Location: 65873-66590 bp Feature: gene Location: 66721-68100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67003-67681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67003-67681 bp Feature: domain Description: InsE Location: 67819-68092 bp Feature: domain Description: InsE Location: 67819-68092 bp Feature: gene Location: 68321-68467 bp Feature: gene Location: 68797-69612 bp Feature: domain Description: Y2_Tnp Location: 68884-69382 bp Feature: domain Description: Y2 _Tnp Location: 68884-69382 bp Feature: gene Location: 157798-158262 bp Feature: domain Description: DDE_3 Location: 157801-158185 bp Feature: domain Description: DDE_3 Location: 157801-158185 bp Feature: gene Location: 158319-158684 bp Feature: domain Description: HTH_Tnp_IS630 Location: 158334-158673 bp Feature: domain Description: HTH_Tnp_IS630 Location: 158334-158673 bp Feature: gene Location: 158784-159800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158787-159441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158787-159441 bp Feature: gene Location: 159902-160366 bp Feature: domain Description: Zn_Tnp_IS91 Location: 159941-160211 bp Feature: domain Description: Zn_Tnp_IS91 Location: 159941-1602 11 bp Feature: gene Location: 160386-160724 bp Feature: domain Description: major_cap_HK97 Location: 160449-160710 bp Feature: domain Description: major_cap_HK97 Location: 160449-160710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)