myRT

myRT report for GCA_003851555.1_ASM385155v1

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Seq: CP027756.1 Pseudomonas synxantha strain R6-28-08 chromosome, complete genome (6562330 bp)
Overview 1 RT 1: 939602-945230 bp 2 RT 2: 4327908-4333208 bp 3 RT 3: 5577682-5585222 bp Neighborhood of RT #1 [939602, 945230] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM ACR3 Neighborhood of RT #2 [4327908, 4333279] RVT-UG3 RVT-UG8 Acetyltransf_3 Acetyltransf_7 Neighborhood of RT #3 [5577682, 5585407] INT_RitA_C_like RVT-UG5 nitrilase KAP_NTPase HTH_XRE ImmA Feature: gene Location: 939602-939937 bp Ori: AZE65061.1 Feature: domain Description: TnpB_IS66 Location: 939620-939908 bp Feature: domain Description: TnpB_IS66 Location: 939620-939908 bp Feature: gene Location: 939999-941327 bp Ori: AZE65062.1 Feature: domain Description: LZ_Tnp_IS66 Location: 940131-940338 bp Feature: domain Description: LZ_Tnp_IS66 Location: 9401 31 -940338 bp Feature: domain Description: zf-IS66 Location: 940377-940491 bp Feature: domain Description: zf-IS66 Location: 940377-940491 bp Feature: domain Description: DDE_Tnp_IS66 Location: 940533-941307 bp Feature: domain Description: DDE_Tnp_IS66 Location: 940533-941 307 bp Feature: gene Location: 941885-943546 bp Ori: AZE65063.1 Feature: domain Description: RVT_N Location: 941930-942173 bp Feature: domain Description: RVT_N Location: 941 930-9421 73 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942218-942854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94221 8-942854 bp Feature: domain Description: GIIM Note: maturase Location: 942911-943139 bp Feature: domain Description: GIIM Note: maturase Location: 94291 1 -9431 39 bp Feature: gene Location: 943911-944873 bp Ori: AZE65064.1 Feature: domain Description: ACR3 Location: 943926-944853 bp Feature: domain Description: ACR3 Location: 943926-944853 bp Feature: gene Location: 945102-945230 bp Feature: gene Location: 4327908-4328141 bp Feature: gene Location: 4328145-4328294 bp Feature: gene Location: 4328513-4329859 bp Ori: AZE68226.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4328966-4329440 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4328966-4329440 bp Feature: gene Location: 4329852-4331900 bp Ori: AZE68227.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4330473-4330920 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4330473-4330920 bp Feature: gene Location: 4332160-4332675 bp Ori: AZE68228.1 Feature: domain Description: Acetyltransf_3 Location: 4332202-4332607 bp Feature: domain Description: Acetyltransf_3 Location: 4332202-4332607 bp Feature: gene Location: 4332797-4333279 bp Ori: AZE68229.1 Feature: domain Description: Acetyltransf_7 Location: 4332986-4333208 bp Feature: domain Description: Acetyltransf_7 Location: 4332986-4333208 bp Feature: gene Location: 5577682-5577786 bp Feature: gene Location: 5577992-5578612 bp Ori: AZE69364.1 Feature: domain Description: INT_RitA_C_like Location: 5578070-5578598 bp Feature: domain Description: INT_RitA_C_like Location: 5578070-5578598 bp Feature: gene Location: 5578814-5581828 bp Ori: AZE69365.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5579291-5579783 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5579291 -5579783 bp Feature: domain Description: nitrilase Location: 5581034-5581724 bp Feature: domain Description: nitrilase Location: 5581 034-5581 724 bp Feature: gene Location: 5581912-5584197 bp Ori: AZE69366.1 Feature: domain Description: KAP_NTPase Location: 5582080-5582812 bp Feature: domain Description: KAP_NTPase Location: 5582080-558281 2 bp Feature: gene Location: 5584256-5585407 bp Ori: AZE69367.1 Feature: domain Description: HTH_XRE Location: 5584277-5584433 bp Feature: domain Description: HTH_XRE Location: 5584277-5584433 bp Feature: domain Description: ImmA Location: 5584691-5585222 bp Feature: domain Description: ImmA Location: 5584691 -5585222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ACR3 (COG0798), RVT-UG3, RVT-UG8
Acetyltransf_3 (pfam13302), Acetyltransf_7 (pfam13508), INT_RitA_C_like (cd01188), RVT-UG5, nitrilase (cl11424), KAP_NTPase (pfam07693), HTH_XRE (smart00530), ImmA (COG2856)