myRT

myRT report for GCA_003851985.1_ASM385198v1

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Seq: CP027753.1 Pseudomonas chlororaphis strain B25 chromosome, complete genome (7016593 bp)
Overview 1 RT 1: 286107-290949 bp 2 RT 2: 2848983-2856850 bp 3 RT 3: 2860550-2863180 bp 4 RT 4: 4119883-4125996 bp 5 RT 5: 5078410-5084200 bp 6 RT 6: 5114451-5124425 bp 7 RT 7: 5171054-5174413 bp Neighborhood of RT #1 [286107, 290951] Ser_hydrolase PspF RVT_N RVT-GII GIIM AtoC NlpA Neighborhood of RT #2 [2848983, 2856850] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII DUF1906 Neighborhood of RT #3 [2860550, 2863401] Haem_oxygenas_2 IS5 RVT_N RVT-GII GIIM Neighborhood of RT #4 [4119883, 4126001] COG3293 COG3293 IS5 RVT_N RVT-GII GIIM DUF2474 AppB Neighborhood of RT #5 [5078410, 5084337] DUF772 COG3547 RVT_N RVT-GII GIIM DDE_Tnp_1 DDE_3 Neighborhood of RT #6 [5114451, 5124425] DDE_Tnp_1_2 HTH_29 RVT-GII InsE TnpB_IS66 HTH_Tnp_ISL3 DDE_Tnp_ISL3 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII DDE_3 Neighborhood of RT #7 [5171054, 5174413] IS5 RVT_N RVT-GII GIIM IstB_IS21 Feature: gene Location: 286107-286688 bp Ori: AZE45963.1 Feature: domain Description: Ser_hydrolase Location: 286131-286644 bp Feature: domain Description: Ser_hydrolase Location: 2861 31 -286644 bp Feature: gene Location: 286743-287399 bp Ori: AZE45964.1 Feature: domain Description: PspF Location: 286782-287391 bp Feature: domain Description: PspF Location: 286782-287391 bp Feature: gene Location: 287992-289497 bp Ori: AZE45965.1 Feature: domain Description: RVT_N Location: 288076-288301 bp Feature: domain Description: RVT_N Location: 288076-288301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288349-288991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288349-288991 bp Feature: domain Description: GIIM Note: maturase Location: 289042-289276 bp Feature: domain Description: GIIM Note: maturase Location: 289042-289276 bp Feature: gene Location: 289597-289857 bp Ori: AZE45966.1 Feature: domain Description: AtoC Location: 289609-289831 bp Feature: domain Description: AtoC Location: 289609-289831 bp Feature: gene Location: 290169-290951 bp Ori: AZE45967.1 Feature: domain Description: NlpA Location: 290178-290949 bp Feature: domain Description: NlpA Location: 2901 78-290949 bp Feature: gene Location: 2848983-2849318 bp Ori: AZE48366.1 Feature: domain Description: TnpB_IS66 Location: 2849001-2849289 bp Feature: domain Description: TnpB_IS66 Location: 2849001 -2849289 bp Feature: gene Location: 2849400-2850926 bp Ori: AZE48367.1 Feature: domain Description: LZ_Tnp_IS66 Location: 2849529-2849739 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2849529-2849739 bp Feature: domain Description: zf-IS66 Location: 2849766-2849892 bp Feature: domain Description: zf-IS66 Location: 2849766-2849892 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2849934-2850777 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2849934-2850777 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2850798-2850909 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2850798-2850909 bp Feature: gene Location: 2851042-2852808 bp Ori: AZE48368.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2851726-2852416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2851 726-285241 6 bp Feature: gene Location: 2853074-2853727 bp Ori: AZE48369.1 Feature: domain Description: DUF1906 Location: 2853164-2853578 bp Feature: domain Description: DUF1 906 Location: 28531 64-2853578 bp Feature: gene Location: 2854160-2856850 bp Feature: gene Location: 2860550-2861245 bp Ori: AZE48376.1 Feature: domain Description: Haem_oxygenas_2 Location: 2860682-2861123 bp Feature: domain Description: Haem_oxygenas_2 Location: 2860682-2861 1 23 bp Feature: gene Location: 2861425-2861706 bp Ori: AZE48377.1 Feature: domain Description: IS5 Location: 2861431-2861701 bp Feature: domain Description: IS5 Location: 2861 431 -2861 701 bp Feature: gene Location: 2861896-2863401 bp Ori: AZE48378.1 Feature: domain Description: RVT_N Location: 2861980-2862205 bp Feature: domain Description: RVT_N Location: 2861 980-2862205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2862253-2862895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2862253-2862895 bp Feature: domain Description: GIIM Note: maturase Location: 2862946-2863180 bp Feature: domain Description: GIIM Note: maturase Location: 2862946-28631 80 bp Feature: gene Location: 4119883-4120938 bp Ori: AZE49494.1 Feature: domain Description: COG3293 Location: 4120117-4120435 bp Feature: domain Description: COG3293 Location: 41 201 1 7-41 20435 bp Feature: domain Description: COG3293 Location: 4120489-4120927 bp Feature: domain Description: COG3293 Location: 41 20489-41 20927 bp Feature: gene Location: 4121023-4121559 bp Ori: AZE49495.1 Feature: domain Description: IS5 Location: 4121209-4121548 bp Feature: domain Description: IS5 Location: 41 21 209-41 21 548 bp Feature: gene Location: 4122152-4123657 bp Ori: AZE49496.1 Feature: domain Description: RVT_N Location: 4122236-4122461 bp Feature: domain Description: RVT_N Location: 41 22236-41 22461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4122509-4123151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 22509-41 231 51 bp Feature: domain Description: GIIM Note: maturase Location: 4123202-4123436 bp Feature: domain Description: GIIM Note: maturase Location: 41 23202-41 23436 bp Feature: gene Location: 4124817-4124978 bp Ori: AZE49497.1 Feature: domain Description: DUF2474 Location: 4124865-4124973 bp Feature: domain Description: DUF2474 Location: 41 24865-41 24973 bp Feature: gene Location: 4124994-4126001 bp Ori: AZE49498.1 Feature: domain Description: AppB Location: 4125006-4125996 bp Feature: domain Description: AppB Location: 41 25006-41 25996 bp Feature: gene Location: 5078410-5078952 bp Ori: AZE50345.1 Feature: domain Description: DUF772 Location: 5078560-5078746 bp Feature: domain Description: DUF772 Location: 5078560-5078746 bp Feature: gene Location: 5079157-5080173 bp Ori: AZE50346.1 Feature: domain Description: COG3547 Location: 5079175-5080132 bp Feature: domain Description: COG3547 Location: 50791 75-50801 32 bp Feature: gene Location: 5080883-5082388 bp Ori: AZE50347.1 Feature: domain Description: RVT_N Location: 5080967-5081192 bp Feature: domain Description: RVT_N Location: 5080967-5081 1 92 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5081240-5081882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5081 240-5081 882 bp Feature: domain Description: GIIM Note: maturase Location: 5081933-5082167 bp Feature: domain Description: GIIM Note: maturase Location: 5081 933-50821 67 bp Feature: gene Location: 5082641-5082919 bp Ori: AZE50348.1 Feature: domain Description: DDE_Tnp_1 Location: 5082662-5082869 bp Feature: domain Description: DDE_Tnp_1 Location: 5082662-5082869 bp Feature: gene Location: 5083591-5084337 bp Ori: AZE50349.1 Feature: domain Description: DDE_3 Location: 5083762-5084200 bp Feature: domain Description: DDE_3 Location: 5083762-5084200 bp Feature: gene Location: 5114451-5114891 bp Ori: AZE50375.1 Feature: domain Description: DDE_Tnp_1_2 Location: 5114601-5114865 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 51 1 4601 -51 1 4865 bp Feature: gene Location: 5114969-5115691 bp Ori: AZE50376.1 Feature: domain Description: HTH_29 Location: 5115071-5115248 bp Feature: domain Description: HTH_29 Location: 51 1 5071 -51 1 5248 bp Feature: gene Location: 5115738-5117420 bp Ori: AZE50377.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5116338-5117028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 6338-51 1 7028 bp Feature: gene Location: 5117690-5118013 bp Ori: AZE50378.1 Feature: domain Description: InsE Location: 5117696-5117900 bp Feature: domain Description: InsE Location: 51 1 7696-51 1 7900 bp Feature: gene Location: 5118010-5118345 bp Ori: AZE50379.1 Feature: domain Description: TnpB_IS66 Location: 5118028-5118316 bp Feature: domain Description: TnpB_IS66 Location: 51 1 8028-51 1 831 6 bp Feature: gene Location: 5119334-5120539 bp Ori: AZE50381.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 5119595-5119724 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 51 1 9595-51 1 9724 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 5119790-5120513 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 51 1 9790-51 2051 3 bp Feature: gene Location: 5120536-5121315 bp Ori: AZE50382.1 Feature: domain Description: DDE_Tnp_IS66 Location: 5120638-5121139 bp Feature: domain Description: DDE_Tnp_IS66 Location: 51 20638-51 21 1 39 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5121160-5121271 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 51 21 1 60-51 21 271 bp Feature: gene Location: 5122183-5123865 bp Ori: AZE50383.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5122783-5123473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 22783-51 23473 bp Feature: gene Location: 5123973-5124293 bp Ori: AZE50384.1 Feature: domain Description: DDE_3 Location: 5123979-5124171 bp Feature: domain Description: DDE_3 Location: 51 23979-51 241 71 bp Feature: gene Location: 5124297-5124425 bp Feature: gene Location: 5171054-5171329 bp Ori: AZE50414.1 Feature: domain Description: IS5 Location: 5171060-5171300 bp Feature: domain Description: IS5 Location: 51 71 060-51 71 300 bp Feature: gene Location: 5171582-5173087 bp Ori: AZE50415.1 Feature: domain Description: RVT_N Location: 5171666-5171891 bp Feature: domain Description: RVT_N Location: 51 71 666-51 71 891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5171939-5172581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 71 939-51 72581 bp Feature: domain Description: GIIM Note: maturase Location: 5172632-5172866 bp Feature: domain Description: GIIM Note: maturase Location: 51 72632-51 72866 bp Feature: gene Location: 5173812-5174180 bp Ori: AZE50416.1 Feature: domain Description: IstB_IS21 Location: 5173815-5174112 bp Feature: domain Description: IstB_IS21 Location: 51 7381 5-51 741 1 2 bp Feature: gene Location: 5174276-5174413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ser_hydrolase (pfam06821), PspF (COG1221), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AtoC (COG2204), NlpA (COG1464), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)
DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), DUF1906 (pfam08924), Haem_oxygenas_2 (pfam14518), IS5 (COG3039), COG3293 (Transposase ), DUF2474 (pfam10617), AppB (COG1294), DUF772 (pfam05598), COG3547 (Transposase )
DDE_Tnp_1 (pfam01609), DDE_3 (pfam13358), DDE_Tnp_1_2 (pfam13586), HTH_29 (pfam13551), InsE (COG2963), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), IstB_IS21 (pfam01695)