myRT

myRT report for GCA_003854935.1_ASM385493v1

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Seq: CP033969.1 Cupriavidus pauculus strain FDAARGOS_614 chromosome 1, complete sequence (3633789 bp)
Overview 1 RT 1: 1332074-1339302 bp 2 RT 2: 2416045-2422919 bp Neighborhood of RT #1 [1332074, 1339307] type_IV_pilB PRK10888 RVT_N RVT-GII GIIM HNHc rplU RpmA Neighborhood of RT #2 [2416045, 2422930] Bcp Xcc1710_like RVT_N RVT-GII GIIM HNHc PRK09265 PRK06349 Feature: gene Location: 1332074-1333795 bp Ori: AZG13361.1 Gene: pilB Feature: domain Description: type_IV_pilB Location: 1332083-1333790 bp Feature: domain Description: type_IV_pilB Location: 1 332083-1 333790 bp Feature: gene Location: 1334307-1335236 bp Ori: AZG15290.1 Feature: domain Description: PRK10888 Location: 1334310-1335231 bp Feature: domain Description: PRK1 0888 Location: 1 33431 0-1 335231 bp Feature: gene Location: 1335400-1337100 bp Ori: AZG13362.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1335457-1335700 bp Feature: domain Description: RVT_N Location: 1 335457-1 335700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1335745-1336393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 335745-1 336393 bp Feature: domain Description: GIIM Note: maturase Location: 1336447-1336678 bp Feature: domain Description: GIIM Note: maturase Location: 1 336447-1 336678 bp Feature: domain Description: HNHc Note: nucleases Location: 1336903-1337062 bp Feature: domain Description: HNHc Note: nucleases Location: 1 336903-1 337062 bp Feature: gene Location: 1338684-1338995 bp Ori: AZG13363.1 Gene: rplU Feature: domain Description: rplU Location: 1338687-1338990 bp Feature: domain Description: rplU Location: 1 338687-1 338990 bp Feature: gene Location: 1339047-1339307 bp Ori: AZG13364.1 Feature: domain Description: RpmA Location: 1339050-1339302 bp Feature: domain Description: RpmA Location: 1 339050-1 339302 bp Feature: gene Location: 2416045-2416506 bp Ori: AZG14234.1 Feature: domain Description: Bcp Location: 2416051-2416501 bp Feature: domain Description: Bcp Location: 241 6051 -241 6501 bp Feature: gene Location: 2416665-2417051 bp Ori: AZG14235.1 Feature: domain Description: Xcc1710_like Location: 2416704-2417028 bp Feature: domain Description: Xcc1 71 0_like Location: 241 6704-241 7028 bp Feature: gene Location: 2418411-2420135 bp Ori: AZG14236.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2418468-2418711 bp Feature: domain Description: RVT_N Location: 241 8468-241 871 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2418756-2419404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 8756-241 9404 bp Feature: domain Description: GIIM Note: maturase Location: 2419458-2419689 bp Feature: domain Description: GIIM Note: maturase Location: 241 9458-241 9689 bp Feature: domain Description: HNHc Note: nucleases Location: 2419914-2420073 bp Feature: domain Description: HNHc Note: nucleases Location: 241 991 4-2420073 bp Feature: gene Location: 2420338-2421567 bp Ori: AZG14237.1 Feature: domain Description: PRK09265 Location: 2420344-2421550 bp Feature: domain Description: PRK09265 Location: 2420344-2421 550 bp Feature: gene Location: 2421620-2422930 bp Ori: AZG14238.1 Feature: domain Description: PRK06349 Location: 2421623-2422919 bp Feature: domain Description: PRK06349 Location: 2421 623-242291 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_IV_pilB (TIGR02538), PRK10888 (octaprenyl diphosphate synthase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), rplU (PRK05573), RpmA (COG0211), Bcp (COG1225), Xcc1710_like (cd05560)
PRK09265 (aminotransferase AlaT; Validated), PRK06349 (homoserine dehydrogenase; Provisional)