myRT

myRT report for GCA_003855135.1_ASM385513v1

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Seq: CP034059.1 Shigella flexneri strain FDAARGOS_535 plasmid unnamed1, complete sequence (217451 bp)
Overview 1 RT 1: 6055-8701 bp 2 RT 2: 98832-100838 bp 3 RT 3: 110594-112479 bp Neighborhood of RT #1 [6055, 8712] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [98832, 100840] Tra5 RVT-GII DDE_Tnp_IS66_C OrfB_IS605 Neighborhood of RT #3 [110594, 112479] RVT-GII Feature: gene Location: 6055-6234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6061-6217 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6061 -621 7 bp Feature: gene Location: 6291-6710 bp Feature: gene Location: 6760-7938 bp Ori: AZG48867.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6907-7561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6907-7561 bp Feature: domain Description: GIIM Note: maturase Location: 7639-7861 bp Feature: domain Description: GIIM Note: maturase Location: 7639-7861 bp Feature: gene Location: 8021-8200 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8066-8177 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8066-81 77 bp Feature: gene Location: 8230-8712 bp Feature: domain Description: COG3547 Location: 8248-8701 bp Feature: domain Description: COG3547 Location: 8248-8701 bp Feature: gene Location: 98832-98912 bp Feature: gene Location: 98931-99149 bp Feature: domain Description: Tra5 Location: 98940-99132 bp Feature: domain Description: Tra5 Location: 98940-991 32 bp Feature: gene Location: 99162-100344 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99462-100011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99462-1 0001 1 bp Feature: gene Location: 100418-100537 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 100460-100535 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 00460-1 00535 bp Feature: gene Location: 100670-100840 bp Feature: domain Description: OrfB_IS605 Location: 100676-100838 bp Feature: domain Description: OrfB_IS605 Location: 1 00676-1 00838 bp Feature: gene Location: 110594-110960 bp Feature: gene Location: 110953-111195 bp Feature: gene Location: 111155-111394 bp Ori: AZG48937.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111161-111368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 1 61 -1 1 1 368 bp Feature: gene Location: 111488-111666 bp Feature: gene Location: 112057-112479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), Tra5 (COG2801), OrfB_IS605 (pfam01385)

Seq: CP034060.1 Shigella flexneri strain FDAARGOS_535 chromosome, complete genome (4586233 bp)
Overview 1 RT 1: 3108705-3112082 bp Neighborhood of RT #1 [3108705, 3112511] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 3108705-3108962 bp Feature: gene Location: 3109045-3109532 bp Feature: domain Description: PHA02517 Location: 3109048-3109219 bp Feature: domain Description: PHA02 517 Location: 3109048-31092 19 bp Feature: gene Location: 3109613-3111121 bp Ori: AZG52882.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3109871-3110603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3109871-3110603 bp Feature: domain Description: GIIM Note: maturase Location: 3110678-3110876 bp Feature: domain Description: GIIM Note: maturase Location: 3110678-3110876 bp Feature: gene Location: 3111430-3111798 bp Feature: gene Location: 3111794-3112511 bp Feature: domain Description: InsE Location: 3111833-3112082 bp Feature: domain Description: InsE Location: 3111833-3112 082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)