myRT

myRT report for GCA_003855395.1_ASM385539v1

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Seq: CP034015.1 Shewanella livingstonensis strain LMG 19866 chromosome, complete genome (4839879 bp)
Overview 1 RT 1: 1092723-1100121 bp 2 RT 2: 2242491-2252385 bp 3 RT 3: 3149435-3154755 bp Neighborhood of RT #1 [1092723, 1100126] Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT-GII GIIM PRK11053 Neighborhood of RT #2 [2242491, 2252385] HTH_MARR RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT-GII Neighborhood of RT #3 [3149435, 3154755] COG3547 RVT-Retrons Feature: gene Location: 1092723-1093796 bp Ori: AZG72139.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1092741-1093014 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 092741 -1 09301 4 bp Feature: domain Description: Y2_Tnp Location: 1093140-1093626 bp Feature: domain Description: Y2_Tnp Location: 1 0931 40-1 093626 bp Feature: gene Location: 1093793-1094683 bp Ori: AZG72140.1 Feature: domain Description: Phage_int_SAM_4 Location: 1093829-1094069 bp Feature: domain Description: Phage_int_SAM_4 Location: 1 093829-1 094069 bp Feature: domain Description: INT_IntI_C Location: 1094105-1094600 bp Feature: domain Description: INT_IntI_C Location: 1 0941 05-1 094600 bp Feature: gene Location: 1095768-1097057 bp Ori: AZG72141.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1096023-1096692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 096023-1 096692 bp Feature: domain Description: GIIM Note: maturase Location: 1096758-1096977 bp Feature: domain Description: GIIM Note: maturase Location: 1 096758-1 096977 bp Feature: gene Location: 1097789-1098868 bp Feature: gene Location: 1099467-1100126 bp Ori: AZG72142.1 Feature: domain Description: PRK11053 Location: 1099479-1100121 bp Feature: domain Description: PRK1 1 053 Location: 1 099479-1 1 001 21 bp Feature: gene Location: 2242491-2242900 bp Feature: domain Description: HTH_MARR Location: 2242566-2242767 bp Feature: domain Description: HTH_MARR Location: 2242566-2242767 bp Feature: gene Location: 2243305-2243655 bp Feature: gene Location: 2244739-2246028 bp Ori: AZG73013.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2244994-2245663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2244994-2245663 bp Feature: domain Description: GIIM Note: maturase Location: 2245756-2245948 bp Feature: domain Description: GIIM Note: maturase Location: 2245756-2245948 bp Feature: gene Location: 2246143-2246484 bp Feature: gene Location: 2246755-2247841 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2246773-2247046 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2246773-2247046 bp Feature: domain Description: Y2_Tnp Location: 2247172-2247631 bp Feature: domain Description: Y2_Tnp Location: 22471 72-2247631 bp Feature: gene Location: 2247838-2248728 bp Ori: AZG73015.1 Feature: domain Description: Phage_int_SAM_4 Location: 2247874-2248114 bp Feature: domain Description: Phage_int_SAM_4 Location: 2247874-22481 1 4 bp Feature: domain Description: INT_IntI_C Location: 2248150-2248645 bp Feature: domain Description: INT_IntI_C Location: 22481 50-2248645 bp Feature: gene Location: 2248795-2249235 bp Feature: gene Location: 2249326-2250716 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2249608-2250226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2249608-2250226 bp Feature: gene Location: 2251473-2251853 bp Feature: gene Location: 2251899-2252385 bp Feature: gene Location: 3149435-3150478 bp Ori: AZG73703.1 Feature: domain Description: COG3547 Location: 3149450-3150404 bp Feature: domain Description: COG3547 Location: 31 49450-31 50404 bp Feature: gene Location: 3150915-3151397 bp Feature: gene Location: 3151630-3152604 bp Ori: AZG73705.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3151732-3152314 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 51 732-31 5231 4 bp Feature: gene Location: 3152595-3153617 bp Feature: gene Location: 3154201-3154755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT-GII, GIIM (pfam08388), PRK11053 (oxygen-insensitive NAD(P)H nitroreductase), HTH_MARR (smart00347), COG3547 (Transposase ), RVT-Retrons