myRT

myRT report for GCA_003855535.1_ASM385553v1

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Seq: CP034076.1 Klebsiella pneumoniae strain KP17-15 chromosome, complete genome (5379069 bp)
Overview 1 RT 1: 777354-784702 bp 2 RT 2: 1787001-1791872 bp 3 RT 3: 3105099-3108245 bp 4 RT 4: 3140278-3143269 bp 5 RT 5: 3277349-3280179 bp Neighborhood of RT #1 [777354, 784752] FimC FimD RVT-UG4 Integrase_1 PRK09692 Neighborhood of RT #2 [1787001, 1791886] dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [3105099, 3108301] PRK10276 RVT-GII Rve Neighborhood of RT #4 [3140278, 3143269] PRK10597 RVT-GII Neighborhood of RT #5 [3277349, 3280190] PRK10276 RVT-GII DinI Feature: gene Location: 777354-778118 bp Ori: AZG90151.1 Feature: domain Description: FimC Location: 777399-778101 bp Feature: domain Description: FimC Location: 777399-7781 01 bp Feature: gene Location: 778165-780759 bp Ori: AZG94252.1 Feature: domain Description: FimD Location: 778207-780748 bp Feature: domain Description: FimD Location: 778207-780748 bp Feature: gene Location: 780756-782837 bp Ori: AZG90152.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 781167-781611 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 781 1 67-781 61 1 bp Feature: gene Location: 782879-783334 bp Ori: AZG90153.1 Feature: domain Description: Integrase_1 Location: 782882-783116 bp Feature: domain Description: Integrase_1 Location: 782882-7831 1 6 bp Feature: gene Location: 783514-784752 bp Feature: domain Description: PRK09692 Location: 783520-784702 bp Feature: domain Description: PRK09692 Location: 783520-784702 bp Feature: gene Location: 1787001-1788170 bp Ori: AZG91040.1 Gene: dacD Feature: domain Description: dacD Location: 1787010-1788165 bp Feature: domain Description: dacD Location: 1 78701 0-1 7881 65 bp Feature: gene Location: 1788439-1788690 bp Feature: gene Location: 1788690-1790174 bp Ori: AZG91042.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1789092-1789782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 789092-1 789782 bp Feature: gene Location: 1790256-1790729 bp Ori: AZG91043.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1790259-1790718 bp Feature: domain Description: PRK1 001 6 Location: 1 790259-1 79071 8 bp Feature: gene Location: 1790828-1791886 bp Ori: AZG91044.1 Feature: domain Description: YccC Location: 1790834-1791872 bp Feature: domain Description: YccC Location: 1 790834-1 791 872 bp Feature: gene Location: 3105099-3105518 bp Ori: AZG92220.1 Feature: domain Description: PRK10276 Location: 3105102-3105513 bp Feature: domain Description: PRK1 0276 Location: 31 051 02-31 0551 3 bp Feature: gene Location: 3105496-3105681 bp Feature: gene Location: 3105597-3107081 bp Ori: AZG92222.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3105999-3106689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 05999-31 06689 bp Feature: gene Location: 3107214-3107477 bp Feature: gene Location: 3107597-3108301 bp Ori: AZG92223.1 Feature: domain Description: Rve Location: 3107600-3108245 bp Feature: domain Description: Rve Location: 31 07600-31 08245 bp Feature: gene Location: 3140278-3140499 bp Feature: gene Location: 3140577-3140810 bp Ori: AZG92261.1 Feature: domain Description: PRK10597 Location: 3140580-3140805 bp Feature: domain Description: PRK1 0597 Location: 31 40580-31 40805 bp Feature: gene Location: 3140889-3142373 bp Ori: AZG92262.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3141291-3141981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 41 291 -31 41 981 bp Feature: gene Location: 3142373-3142624 bp Feature: gene Location: 3142852-3143269 bp Feature: gene Location: 3277349-3277768 bp Ori: AZG92396.1 Feature: domain Description: PRK10276 Location: 3277352-3277763 bp Feature: domain Description: PRK1 0276 Location: 3277352-3277763 bp Feature: gene Location: 3277746-3277931 bp Feature: gene Location: 3277847-3279331 bp Ori: AZG92398.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3278249-3278939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3278249-3278939 bp Feature: gene Location: 3279331-3279582 bp Feature: gene Location: 3279948-3280190 bp Ori: AZG92400.1 Feature: domain Description: DinI Location: 3279999-3280179 bp Feature: domain Description: DinI Location: 3279999-32801 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)
Rve (COG3316), PRK10597 (DNA damage-inducible protein I; Provisional), DinI (pfam06183)