myRT

myRT report for GCA_003855555.1_ASM385555v1

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Seq: CP034077.1 Klebsiella pneumoniae strain KP17-16 chromosome, complete genome (5378952 bp)
Overview 1 RT 1: 777354-784702 bp 2 RT 2: 1787001-1791872 bp 3 RT 3: 3104982-3108128 bp 4 RT 4: 3140161-3143152 bp 5 RT 5: 3277232-3280062 bp Neighborhood of RT #1 [777354, 784752] FimC FimD RVT-UG4 Integrase_1 PRK09692 Neighborhood of RT #2 [1787001, 1791886] dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [3104982, 3108184] PRK10276 RVT-GII Rve Neighborhood of RT #4 [3140161, 3143152] PRK10597 RVT-GII Neighborhood of RT #5 [3277232, 3280073] PRK10276 RVT-GII DinI Feature: gene Location: 777354-778118 bp Ori: AZG79878.1 Feature: domain Description: FimC Location: 777399-778101 bp Feature: domain Description: FimC Location: 777399-7781 01 bp Feature: gene Location: 778165-780759 bp Ori: AZG83979.1 Feature: domain Description: FimD Location: 778207-780748 bp Feature: domain Description: FimD Location: 778207-780748 bp Feature: gene Location: 780756-782837 bp Ori: AZG79879.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 781167-781611 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 781 1 67-781 61 1 bp Feature: gene Location: 782879-783334 bp Ori: AZG79880.1 Feature: domain Description: Integrase_1 Location: 782882-783116 bp Feature: domain Description: Integrase_1 Location: 782882-7831 1 6 bp Feature: gene Location: 783514-784752 bp Feature: domain Description: PRK09692 Location: 783520-784702 bp Feature: domain Description: PRK09692 Location: 783520-784702 bp Feature: gene Location: 1787001-1788170 bp Ori: AZG80767.1 Gene: dacD Feature: domain Description: dacD Location: 1787010-1788165 bp Feature: domain Description: dacD Location: 1 78701 0-1 7881 65 bp Feature: gene Location: 1788439-1788690 bp Feature: gene Location: 1788690-1790174 bp Ori: AZG80769.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1789092-1789782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 789092-1 789782 bp Feature: gene Location: 1790256-1790729 bp Ori: AZG80770.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1790259-1790718 bp Feature: domain Description: PRK1 001 6 Location: 1 790259-1 79071 8 bp Feature: gene Location: 1790828-1791886 bp Ori: AZG80771.1 Feature: domain Description: YccC Location: 1790834-1791872 bp Feature: domain Description: YccC Location: 1 790834-1 791 872 bp Feature: gene Location: 3104982-3105401 bp Ori: AZG81947.1 Feature: domain Description: PRK10276 Location: 3104985-3105396 bp Feature: domain Description: PRK1 0276 Location: 31 04985-31 05396 bp Feature: gene Location: 3105379-3105564 bp Feature: gene Location: 3105480-3106964 bp Ori: AZG81949.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3105882-3106572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 05882-31 06572 bp Feature: gene Location: 3107097-3107360 bp Feature: gene Location: 3107480-3108184 bp Ori: AZG81950.1 Feature: domain Description: Rve Location: 3107483-3108128 bp Feature: domain Description: Rve Location: 31 07483-31 081 28 bp Feature: gene Location: 3140161-3140382 bp Feature: gene Location: 3140460-3140693 bp Ori: AZG81988.1 Feature: domain Description: PRK10597 Location: 3140463-3140688 bp Feature: domain Description: PRK1 0597 Location: 31 40463-31 40688 bp Feature: gene Location: 3140772-3142256 bp Ori: AZG81989.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3141174-3141864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 41 1 74-31 41 864 bp Feature: gene Location: 3142256-3142507 bp Feature: gene Location: 3142735-3143152 bp Feature: gene Location: 3277232-3277651 bp Ori: AZG82123.1 Feature: domain Description: PRK10276 Location: 3277235-3277646 bp Feature: domain Description: PRK1 0276 Location: 3277235-3277646 bp Feature: gene Location: 3277629-3277814 bp Feature: gene Location: 3277730-3279214 bp Ori: AZG82125.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3278132-3278822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32781 32-3278822 bp Feature: gene Location: 3279214-3279465 bp Feature: gene Location: 3279831-3280073 bp Ori: AZG82127.1 Feature: domain Description: DinI Location: 3279882-3280062 bp Feature: domain Description: DinI Location: 3279882-3280062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)
Rve (COG3316), PRK10597 (DNA damage-inducible protein I; Provisional), DinI (pfam06183)