myRT

myRT report for GCA_003856575.1_ASM385657v1

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Seq: CP023834.1 Escherichia coli strain 4/2-1 chromosome, complete genome (4735721 bp)
Overview 1 RT 1: 1230406-1235444 bp 2 RT 2: 3175791-3181131 bp 3 RT 3: 3425879-3429244 bp Neighborhood of RT #1 [1230406, 1235841] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [3175791, 3181154] RVT-GII RVT-GII GIIM YesM YesN YesN Neighborhood of RT #3 [3425879, 3429641] DUF1016_N PHA02517 RVT-GII GIIM InsE Feature: gene Location: 1230406-1232316 bp Feature: gene Location: 1232358-1232831 bp Feature: domain Description: PHA02517 Location: 1232364-1232829 bp Feature: domain Description: PHA0251 7 Location: 1 232364-1 232829 bp Feature: gene Location: 1232921-1234444 bp Ori: AZH43660.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1233194-1233926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2331 94-1 233926 bp Feature: domain Description: GIIM Note: maturase Location: 1234001-1234199 bp Feature: domain Description: GIIM Note: maturase Location: 1 234001 -1 2341 99 bp Feature: gene Location: 1234738-1235109 bp Feature: gene Location: 1235102-1235841 bp Feature: domain Description: InsE Location: 1235105-1235444 bp Feature: domain Description: InsE Location: 1 2351 05-1 235444 bp Feature: gene Location: 3175791-3176696 bp Feature: gene Location: 3176670-3176957 bp Feature: gene Location: 3177182-3177721 bp Ori: AZH45393.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3177512-3177590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 7751 2-31 77590 bp Feature: gene Location: 3177749-3178270 bp Ori: AZH45394.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3177755-3178037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 77755-31 78037 bp Feature: domain Description: GIIM Note: maturase Location: 3178085-3178265 bp Feature: domain Description: GIIM Note: maturase Location: 31 78085-31 78265 bp Feature: gene Location: 3178853-3180082 bp Ori: AZH45395.1 Feature: domain Description: YesM Location: 3179333-3180074 bp Feature: domain Description: YesM Location: 31 79333-31 80074 bp Feature: gene Location: 3180099-3181154 bp Ori: AZH45396.1 Feature: domain Description: YesN Location: 3180102-3180492 bp Feature: domain Description: YesN Location: 31 801 02-31 80492 bp Feature: domain Description: YesN Location: 3180834-3181131 bp Feature: domain Description: YesN Location: 31 80834-31 81 1 31 bp Feature: gene Location: 3425879-3426115 bp Feature: domain Description: DUF1016_N Location: 3425936-3426113 bp Feature: domain Description: DUF1 01 6_N Location: 3425936-34261 1 3 bp Feature: gene Location: 3426158-3426631 bp Feature: domain Description: PHA02517 Location: 3426164-3426629 bp Feature: domain Description: PHA0251 7 Location: 34261 64-3426629 bp Feature: gene Location: 3426721-3428244 bp Ori: AZH45632.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3426994-3427726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3426994-3427726 bp Feature: domain Description: GIIM Note: maturase Location: 3427801-3427999 bp Feature: domain Description: GIIM Note: maturase Location: 3427801 -3427999 bp Feature: gene Location: 3428538-3428909 bp Feature: gene Location: 3428902-3429641 bp Feature: domain Description: InsE Location: 3428905-3429244 bp Feature: domain Description: InsE Location: 3428905-3429244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), YesM (COG2972), YesN (COG4753), DUF1016_N (pfam17761)

Seq: CP023835.1 Escherichia coli strain 4/2-1 plasmid p4_2_1.1, complete sequence (152425 bp)
Overview 1 RT 1: 12872-16834 bp Neighborhood of RT #1 [12872, 16839] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 12872-13104 bp Feature: gene Location: 13106-13312 bp Feature: gene Location: 13990-15891 bp Ori: AZH47017.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14257-15088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 57-15088 bp Feature: domain Description: Intron_maturas2 Location: 15202-15460 bp Feature: domain Description: Intron_maturas2 Location: 152 02 -15460 bp Feature: domain Description: HNHc Note: nucleases Location: 15634-15796 bp Feature: domain Description: HNHc Note: nucleases Location: 15634-15796 bp Feature: gene Location: 16041-16538 bp Ori: AZH47018.1 Feature: domain Description: PRK13732 Location: 16044-16536 bp Feature: domain Description: PRK13732 Location: 16044-16536 bp Feature: gene Location: 16606-16839 bp Ori: AZH47019.1 Feature: domain Description: DUF905 Location: 16636-16834 bp Feature: domain Description: DUF905 Location: 16636-16834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)