myRT

myRT report for GCA_003856635.1_ASM385663v1

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Seq: CP023853.1 Escherichia coli strain 2/0 chromosome, complete genome (5174317 bp)
Overview 1 RT 1: 1406580-1411478 bp 2 RT 2: 4202802-4206351 bp 3 RT 3: 5005932-5009159 bp Neighborhood of RT #1 [1406580, 1411478] RVT-Retrons Neighborhood of RT #2 [4202802, 4206751] zinc_ribbon_11 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [5005932, 5009326] PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 1406580-1406810 bp Feature: gene Location: 1407025-1407264 bp Feature: gene Location: 1407835-1409592 bp Ori: AZH64639.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1407979-1408597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 407979-1 408597 bp Feature: gene Location: 1409839-1410966 bp Feature: gene Location: 1410963-1411478 bp Feature: gene Location: 4202802-4203284 bp Ori: AZH67217.1 Feature: domain Description: zinc_ribbon_11 Location: 4202901-4203219 bp Feature: domain Description: zinc_ribbon_1 1 Location: 4202901 -420321 9 bp Feature: gene Location: 4203268-4203741 bp Feature: domain Description: PHA02517 Location: 4203274-4203739 bp Feature: domain Description: PHA0251 7 Location: 4203274-4203739 bp Feature: gene Location: 4203831-4205354 bp Ori: AZH67218.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4204104-4204836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42041 04-4204836 bp Feature: domain Description: GIIM Note: maturase Location: 4204911-4205109 bp Feature: domain Description: GIIM Note: maturase Location: 420491 1 -42051 09 bp Feature: gene Location: 4205648-4206019 bp Feature: gene Location: 4206012-4206751 bp Feature: domain Description: InsE Location: 4206015-4206351 bp Feature: domain Description: InsE Location: 420601 5-4206351 bp Feature: gene Location: 5005932-5006237 bp Feature: domain Description: PHA02517 Location: 5005935-5006238 bp Feature: domain Description: PHA0251 7 Location: 5005935-5006238 bp Feature: gene Location: 5006170-5006601 bp Feature: gene Location: 5006895-5008418 bp Ori: AZH67924.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5007168-5007900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50071 68-5007900 bp Feature: domain Description: GIIM Note: maturase Location: 5007975-5008173 bp Feature: domain Description: GIIM Note: maturase Location: 5007975-50081 73 bp Feature: gene Location: 5008499-5008986 bp Feature: domain Description: PHA02517 Location: 5008502-5008673 bp Feature: domain Description: PHA0251 7 Location: 5008502-5008673 bp Feature: gene Location: 5008913-5009326 bp Ori: AZH67925.1 Feature: domain Description: COG2085 Location: 5009012-5009159 bp Feature: domain Description: COG2085 Location: 500901 2-50091 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, zinc_ribbon_11 (pfam11682), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: CP023854.1 Escherichia coli strain 2/0 plasmid p2_0.1, complete sequence (135053 bp)
Overview 1 RT 1: 15575-19488 bp Neighborhood of RT #1 [15575, 19493] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 15575-15763 bp Feature: gene Location: 15765-15971 bp Feature: gene Location: 16649-18550 bp Ori: AZH68298.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16916-17747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16916-17747 bp Feature: domain Description: Intron_maturas2 Location: 17861-18119 bp Feature: domain Description: Intron_maturas2 Location: 17861-18119 bp Feature: domain Description: HNHc Note: nucleases Location: 18293-18455 bp Feature: domain Description: HNHc Note: nucleases Location: 182 93-18455 bp Feature: gene Location: 18700-19197 bp Ori: AZH68299.1 Feature: domain Description: PRK13732 Location: 18703-19195 bp Feature: domain Description: PRK13732 Location: 18703-19195 bp Feature: gene Location: 19260-19493 bp Ori: AZH68300.1 Feature: domain Description: DUF905 Location: 19290-19488 bp Feature: domain Description: DUF905 Location: 192 90-19488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)