myRT

myRT report for GCA_003860645.2_ASM386064v2

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Seq: CP034201.2 Klebsiella pneumoniae subsp. pneumoniae strain KpvST383_NDM_OXA-48 plasmid pKpvST383L, complete sequence (372826 bp)
Overview 1 RT 1: 52052-56469 bp Neighborhood of RT #1 [52052, 56483] cas7_csf2 RVT-GII PRK10276 Feature: gene Location: 52052-52843 bp Ori: QCT00633.1 Feature: domain Description: cas7_csf2 Location: 52373-52787 bp Feature: domain Description: cas7_csf2 Location: 52373-52787 bp Feature: gene Location: 54239-54490 bp Feature: gene Location: 54490-55975 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54892-55582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54892-55582 bp Feature: gene Location: 55891-56070 bp Feature: gene Location: 56061-56483 bp Ori: QCT00383.1 Gene: umuD Feature: domain Description: PRK10276 Location: 56067-56469 bp Feature: domain Description: PRK1 0276 Location: 56067-56469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas7_csf2 (TIGR03115), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP034200.2 Klebsiella pneumoniae subsp. pneumoniae strain KpvST383_NDM_OXA-48 chromosome, complete genome (5361371 bp)
Overview 1 RT 1: 94848-97797 bp 2 RT 2: 535624-539340 bp 3 RT 3: 1721204-1728959 bp 4 RT 4: 1893026-1895856 bp 5 RT 5: 2241549-2245574 bp 6 RT 6: 4195238-4200332 bp 7 RT 7: 5307633-5311875 bp 8 RT 8: 5317469-5321788 bp Neighborhood of RT #1 [94848, 97797] RVT-GII Neighborhood of RT #2 [535624, 539351] dacD RVT-GII PRK10016 Neighborhood of RT #3 [1721204, 1728959] PRK15110 PRK09951 RVT-UG11 umuC PRK10276 RVT-GII Neighborhood of RT #4 [1893026, 1895867] PRK10276 RVT-GII DinI Neighborhood of RT #5 [2241549, 2246458] DinI RVT-GII Phage_GPA Neighborhood of RT #6 [4195238, 4200337] RVT-Retrons PRK11462 Neighborhood of RT #7 [5307633, 5311875] INT_P4_C RVT-GII ComA-like_MBL-fold ComA-like_MBL-fold Neighborhood of RT #8 [5317469, 5321788] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 94848-95108 bp Feature: gene Location: 95219-95557 bp Feature: gene Location: 95654-97137 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96056-96746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96056-96746 bp Feature: gene Location: 97137-97388 bp Feature: gene Location: 97540-97797 bp Feature: gene Location: 535624-536793 bp Ori: QCS95960.1 Gene: dacD Feature: domain Description: dacD Location: 535633-536788 bp Feature: domain Description: dacD Location: 535633-536788 bp Feature: gene Location: 537062-537313 bp Feature: gene Location: 537313-538796 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537715-538405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537715-538405 bp Feature: gene Location: 538742-538969 bp Feature: gene Location: 538878-539351 bp Ori: QCS95963.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 538881-539340 bp Feature: domain Description: PRK10016 Location: 538881-539340 bp Feature: gene Location: 1721204-1722169 bp Ori: QCS96948.1 Gene: sapB Feature: domain Description: PRK15110 Location: 1721207-1722167 bp Feature: domain Description: PRK15110 Location: 172 12 07-172 2 167 bp Feature: gene Location: 1722374-1723042 bp Ori: QCS96949.1 Feature: domain Description: PRK09951 Location: 1722377-1723040 bp Feature: domain Description: PRK09951 Location: 172 2 377-172 3040 bp Feature: gene Location: 1723243-1724151 bp Ori: QCS96950.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1723516-1723972 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 172 3516-172 3972 bp Feature: gene Location: 1724824-1726089 bp Ori: QCS96951.1 Feature: domain Description: umuC Location: 1724827-1726087 bp Feature: domain Description: umuC Location: 172 482 7-172 6087 bp Feature: gene Location: 1726091-1726510 bp Ori: QCS96952.1 Gene: umuD Feature: domain Description: PRK10276 Location: 1726094-1726505 bp Feature: domain Description: PRK102 76 Location: 172 6094-172 6505 bp Feature: gene Location: 1726590-1728074 bp Ori: QCS96953.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1726992-1727682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 6992 -172 7682 bp Feature: gene Location: 1728074-1728325 bp Feature: gene Location: 1728870-1728959 bp Feature: gene Location: 1893026-1893445 bp Ori: QCS97106.1 Gene: umuD Feature: domain Description: PRK10276 Location: 1893029-1893440 bp Feature: domain Description: PRK102 76 Location: 189302 9-1893440 bp Feature: gene Location: 1893423-1893608 bp Feature: gene Location: 1893524-1895008 bp Ori: QCS97108.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893926-1894616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189392 6-1894616 bp Feature: gene Location: 1895008-1895259 bp Feature: gene Location: 1895625-1895867 bp Ori: QCS97110.1 Feature: domain Description: DinI Location: 1895676-1895856 bp Feature: domain Description: DinI Location: 1895676-1895856 bp Feature: gene Location: 2241549-2241854 bp Ori: QCS97404.1 Feature: domain Description: DinI Location: 2241663-2241849 bp Feature: domain Description: DinI Location: 2 2 41663-2 2 41849 bp Feature: gene Location: 2241793-2241981 bp Feature: gene Location: 2242082-2243566 bp Ori: QCS97405.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2242484-2243174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 42 484-2 2 43174 bp Feature: gene Location: 2243566-2243817 bp Feature: gene Location: 2244044-2246458 bp Ori: QCS97407.1 Feature: domain Description: Phage_GPA Location: 2244608-2245574 bp Feature: domain Description: Phage_GPA Location: 2 2 44608-2 2 45574 bp Feature: gene Location: 4195238-4195433 bp Feature: gene Location: 4195466-4195924 bp Feature: gene Location: 4196160-4197110 bp Ori: QCS99047.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4196259-4196850 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41962 59-4196850 bp Feature: gene Location: 4197097-4198047 bp Feature: gene Location: 4198943-4200337 bp Ori: QCS99049.1 Feature: domain Description: PRK11462 Location: 4198946-4200332 bp Feature: domain Description: PRK11462 Location: 4198946-42 00332 bp Feature: gene Location: 5307633-5308133 bp Feature: domain Description: INT_P4_C Location: 5307636-5308026 bp Feature: domain Description: INT_P4_C Location: 5307636-530802 6 bp Feature: gene Location: 5308363-5308614 bp Feature: gene Location: 5308614-5310098 bp Ori: QCT00038.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5309016-5309706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5309016-5309706 bp Feature: gene Location: 5310306-5311382 bp Ori: QCT00039.1 Feature: domain Description: ComA-like_MBL-fold Location: 5310333-5310720 bp Feature: domain Description: ComA-like_MBL-fold Location: 5310333-531072 0 bp Feature: domain Description: ComA-like_MBL-fold Location: 5310957-5311116 bp Feature: domain Description: ComA-like_MBL-fold Location: 5310957-5311116 bp Feature: gene Location: 5311372-5311875 bp Feature: gene Location: 5317469-5318110 bp Ori: QCT00044.1 Feature: domain Description: TIGR02646 Location: 5317571-5317946 bp Feature: domain Description: TIGR02 646 Location: 5317571-5317946 bp Feature: gene Location: 5318095-5319687 bp Ori: QCT00045.1 Feature: domain Description: COG3950 Location: 5318275-5319496 bp Feature: domain Description: COG3950 Location: 53182 75-5319496 bp Feature: gene Location: 5319665-5320630 bp Ori: QCT00046.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5319773-5320370 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5319773-532 0370 bp Feature: gene Location: 5321056-5321697 bp Feature: gene Location: 5321699-5321788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), PRK15110 (peptide ABC transporter permease SapB), PRK09951 (hypothetical protein; Provisional), RVT-UG11, umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), Phage_GPA (pfam05840)
RVT-Retrons, PRK11462 (putative transporter; Provisional), INT_P4_C (cd00801), ComA-like_MBL-fold (cd07731), TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence )