myRT

myRT report for GCA_003925895.1_ASM392589v1

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Seq: AP019189.1 Escherichia coli M217 DNA, complete genome (4825589 bp)
Overview 1 RT 1: 516552-520309 bp 2 RT 2: 821388-827779 bp 3 RT 3: 2747249-2751137 bp 4 RT 4: 3704126-3708148 bp 5 RT 5: 4126654-4131805 bp 6 RT 6: 4142947-4150720 bp Neighborhood of RT #1 [516552, 520314] InsE PHA02517 RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [821388, 827805] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #3 [2747249, 2754058] InsE PHA02517 RVT-GII GIIM PHA02517 phage_tail_N Neighborhood of RT #4 [3704126, 3708148] DUF3387 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4126654, 4131807] fecE RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [4142947, 4150827] InsE PHA02517 RVT-GII GIIM PHA02517 PRK09692 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 516552-516878 bp Ori: BBG76285.1 Feature: domain Description: InsE Location: 516555-516876 bp Feature: domain Description: InsE Location: 51 6555-51 6876 bp Feature: gene Location: 516878-517357 bp Ori: BBG76286.1 Feature: domain Description: PHA02517 Location: 516938-517292 bp Feature: domain Description: PHA0251 7 Location: 51 6938-51 7292 bp Feature: gene Location: 517964-519472 bp Ori: BBG76287.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518222-518954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 8222-51 8954 bp Feature: domain Description: GIIM Note: maturase Location: 519029-519227 bp Feature: domain Description: GIIM Note: maturase Location: 51 9029-51 9227 bp Feature: gene Location: 519664-520035 bp Ori: BBG76288.1 Feature: domain Description: PHA02517 Location: 519667-520033 bp Feature: domain Description: PHA0251 7 Location: 51 9667-520033 bp Feature: gene Location: 520075-520314 bp Ori: BBG76289.1 Feature: domain Description: DUF1016_N Location: 520132-520309 bp Feature: domain Description: DUF1 01 6_N Location: 5201 32-520309 bp Feature: gene Location: 821388-822443 bp Ori: BBG76585.1 Feature: domain Description: YesN Location: 821391-821781 bp Feature: domain Description: YesN Location: 821 391 -821 781 bp Feature: domain Description: YesN Location: 822123-822420 bp Feature: domain Description: YesN Location: 8221 23-822420 bp Feature: gene Location: 822460-823722 bp Ori: BBG76586.1 Feature: domain Description: YesM Location: 822973-823714 bp Feature: domain Description: YesM Location: 822973-82371 4 bp Feature: gene Location: 824272-824793 bp Ori: BBG76587.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824278-824560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824278-824560 bp Feature: domain Description: GIIM Note: maturase Location: 824608-824788 bp Feature: domain Description: GIIM Note: maturase Location: 824608-824788 bp Feature: gene Location: 824821-825234 bp Ori: BBG76588.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825025-825103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825025-8251 03 bp Feature: gene Location: 825846-826751 bp Feature: gene Location: 826888-827805 bp Ori: BBG76590.1 Feature: domain Description: PFLE_PFLC Location: 826924-827779 bp Feature: domain Description: PFLE_PFLC Location: 826924-827779 bp Feature: gene Location: 2747249-2747575 bp Ori: BBG78359.1 Feature: domain Description: InsE Location: 2747252-2747573 bp Feature: domain Description: InsE Location: 2747252-2747573 bp Feature: gene Location: 2747575-2748054 bp Ori: BBG78360.1 Feature: domain Description: PHA02517 Location: 2747635-2747989 bp Feature: domain Description: PHA0251 7 Location: 2747635-2747989 bp Feature: gene Location: 2748661-2750169 bp Ori: BBG78361.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748919-2749651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274891 9-2749651 bp Feature: domain Description: GIIM Note: maturase Location: 2749726-2749924 bp Feature: domain Description: GIIM Note: maturase Location: 2749726-2749924 bp Feature: gene Location: 2750361-2750732 bp Ori: BBG78362.1 Feature: domain Description: PHA02517 Location: 2750364-2750730 bp Feature: domain Description: PHA0251 7 Location: 2750364-2750730 bp Feature: gene Location: 2750735-2754058 bp Ori: BBG78363.1 Feature: domain Description: phage_tail_N Location: 2750738-2751137 bp Feature: domain Description: phage_tail_N Location: 2750738-2751 1 37 bp Feature: gene Location: 3704126-3704797 bp Ori: BBG79239.1 Feature: domain Description: DUF3387 Location: 3704129-3704786 bp Feature: domain Description: DUF3387 Location: 37041 29-3704786 bp Feature: gene Location: 3704865-3705239 bp Ori: BBG79240.1 Feature: domain Description: PHA02517 Location: 3704868-3705228 bp Feature: domain Description: PHA0251 7 Location: 3704868-3705228 bp Feature: gene Location: 3705434-3706942 bp Ori: BBG79241.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3705692-3706424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3705692-3706424 bp Feature: domain Description: GIIM Note: maturase Location: 3706499-3706697 bp Feature: domain Description: GIIM Note: maturase Location: 3706499-3706697 bp Feature: gene Location: 3707549-3707812 bp Ori: BBG79242.1 Feature: domain Description: PHA02517 Location: 3707555-3707747 bp Feature: domain Description: PHA0251 7 Location: 3707555-3707747 bp Feature: gene Location: 3707942-3708148 bp Feature: gene Location: 4126654-4127421 bp Ori: BBG79619.1 Gene: fecE Feature: domain Description: fecE Location: 4126657-4127419 bp Feature: domain Description: fecE Location: 41 26657-41 2741 9 bp Feature: gene Location: 4127979-4128236 bp Feature: gene Location: 4128887-4130395 bp Ori: BBG79621.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4129145-4129877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 291 45-41 29877 bp Feature: domain Description: GIIM Note: maturase Location: 4129952-4130150 bp Feature: domain Description: GIIM Note: maturase Location: 41 29952-41 301 50 bp Feature: gene Location: 4131002-4131481 bp Ori: BBG79622.1 Feature: domain Description: PHA02517 Location: 4131062-4131416 bp Feature: domain Description: PHA0251 7 Location: 41 31 062-41 31 41 6 bp Feature: gene Location: 4131481-4131807 bp Ori: BBG79623.1 Feature: domain Description: InsE Location: 4131484-4131805 bp Feature: domain Description: InsE Location: 41 31 484-41 31 805 bp Feature: gene Location: 4142947-4143249 bp Ori: BBG79635.1 Feature: domain Description: InsE Location: 4142986-4143235 bp Feature: domain Description: InsE Location: 41 42986-41 43235 bp Feature: gene Location: 4143467-4143730 bp Ori: BBG79636.1 Feature: domain Description: PHA02517 Location: 4143473-4143665 bp Feature: domain Description: PHA0251 7 Location: 41 43473-41 43665 bp Feature: gene Location: 4144337-4145845 bp Ori: BBG79637.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4144595-4145327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 44595-41 45327 bp Feature: domain Description: GIIM Note: maturase Location: 4145402-4145600 bp Feature: domain Description: GIIM Note: maturase Location: 41 45402-41 45600 bp Feature: gene Location: 4146037-4146408 bp Ori: BBG79638.1 Feature: domain Description: PHA02517 Location: 4146040-4146406 bp Feature: domain Description: PHA0251 7 Location: 41 46040-41 46406 bp Feature: gene Location: 4146639-4147190 bp Ori: BBG79639.1 Feature: domain Description: PRK09692 Location: 4146645-4147188 bp Feature: domain Description: PRK09692 Location: 41 46645-41 471 88 bp Feature: gene Location: 4147250-4147552 bp Ori: BBG79640.1 Feature: domain Description: Arm-DNA-bind_3 Location: 4147259-4147511 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 47259-41 4751 1 bp Feature: gene Location: 4148007-4148939 bp Ori: BBG79641.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4148109-4148703 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 481 09-41 48703 bp Feature: gene Location: 4148941-4149927 bp Feature: gene Location: 4150555-4150827 bp Ori: BBG79643.1 Feature: domain Description: PRK09678 Location: 4150564-4150720 bp Feature: domain Description: PRK09678 Location: 41 50564-41 50720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DUF1016_N (pfam17761), YesN (COG4753), YesM (COG2972), PFLE_PFLC (TIGR02494), phage_tail_N (pfam08400), DUF3387 (pfam11867)
fecE (PRK11231), PRK09692 (Integrase; provisional), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)