myRT

myRT report for GCA_003925915.1_ASM392591v1

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Seq: AP018756.1 Metakosakonia sp. MRY16-398 DNA, complete genome (5919168 bp)
Overview 1 RT 1: 1390959-1400267 bp 2 RT 2: 5354626-5360476 bp Neighborhood of RT #1 [1390959, 1400278] WGR_DNA_ligase RVT-Retrons BaeS PRK10722 Neighborhood of RT #2 [5354626, 5360481] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 1390959-1393973 bp Ori: BBE76287.1 Feature: domain Description: WGR_DNA_ligase Location: 1390974-1391205 bp Feature: domain Description: WGR_DNA_ligase Location: 1 390974-1 391 205 bp Feature: gene Location: 1393963-1395585 bp Feature: gene Location: 1395904-1397604 bp Ori: BBE76289.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1396456-1397068 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 396456-1 397068 bp Feature: gene Location: 1398159-1399547 bp Ori: BBE76290.1 Feature: domain Description: BaeS Location: 1398570-1399533 bp Feature: domain Description: BaeS Location: 1 398570-1 399533 bp Feature: gene Location: 1399565-1400278 bp Ori: BBE76291.1 Feature: domain Description: PRK10722 Location: 1399598-1400267 bp Feature: domain Description: PRK1 0722 Location: 1 399598-1 400267 bp Feature: gene Location: 5354626-5354979 bp Ori: BBE80065.1 Feature: domain Description: DUF4156 Location: 5354695-5354971 bp Feature: domain Description: DUF41 56 Location: 5354695-5354971 bp Feature: gene Location: 5355420-5355581 bp Ori: BBE80066.1 Feature: domain Description: DUF2188 Location: 5355435-5355579 bp Feature: domain Description: DUF21 88 Location: 5355435-5355579 bp Feature: gene Location: 5355730-5357403 bp Ori: BBE80067.1 Feature: domain Description: RVT_N Location: 5355793-5356027 bp Feature: domain Description: RVT_N Location: 5355793-5356027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5356081-5356726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5356081 -5356726 bp Feature: domain Description: GIIM Note: maturase Location: 5356780-5357011 bp Feature: domain Description: GIIM Note: maturase Location: 5356780-535701 1 bp Feature: domain Description: HNHc Note: nucleases Location: 5357233-5357374 bp Feature: domain Description: HNHc Note: nucleases Location: 5357233-5357374 bp Feature: gene Location: 5358497-5360143 bp Ori: BBE80068.1 Gene: groL Feature: domain Description: groEL Location: 5358503-5360129 bp Feature: domain Description: groEL Location: 5358503-53601 29 bp Feature: gene Location: 5360188-5360481 bp Ori: BBE80069.1 Gene: groS Feature: domain Description: groES Location: 5360191-5360476 bp Feature: domain Description: groES Location: 53601 91 -5360476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), RVT-Retrons, BaeS (COG0642), PRK10722 (two-component system QseEF-associated lipoprotein QseG), DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)
groEL (PRK12852), groES (PRK14533)

Seq: AP018757.1 Metakosakonia sp. MRY16-398 plasmid pMRY16-398_1 DNA, complete genome (224544 bp)
Overview 1 RT 1: 214612-218557 bp Neighborhood of RT #1 [214612, 218571] GckA Rve RVT-GII PRK10276 Feature: gene Location: 214612-215871 bp Ori: BBE80828.1 Feature: domain Description: GckA Location: 214630-215866 bp Feature: domain Description: GckA Location: 2 14630-2 15866 bp Feature: gene Location: 216027-216731 bp Ori: BBE80829.1 Feature: domain Description: Rve Location: 216030-216675 bp Feature: domain Description: Rve Location: 2 16030-2 16675 bp Feature: gene Location: 216778-217743 bp Ori: BBE80830.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217183-217726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 17183-2 1772 6 bp Feature: gene Location: 217794-218027 bp Feature: gene Location: 218146-218571 bp Ori: BBE80832.1 Feature: domain Description: PRK10276 Location: 218149-218557 bp Feature: domain Description: PRK102 76 Location: 2 18149-2 18557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GckA (COG2379), Rve (COG3316), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)