myRT

myRT report for GCA_003931815.1_ASM393181v1

Download annotations/find similar RTs

Seq: CP034251.1 Salmonella enterica subsp. enterica serovar Derby strain Sa64 plasmid pSa64T-188, complete sequence (188966 bp)
Overview 1 RT 1: 11034-14170 bp Neighborhood of RT #1 [11034, 14170] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 11034-11240 bp Feature: gene Location: 11344-11630 bp Feature: gene Location: 12204-13871 bp Ori: AZK53134.1 Gene: ltrA Feature: domain Description: RVT_N Location: 12252-12489 bp Feature: domain Description: RVT_N Location: 1 2252-1 2489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12540-13182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2540-1 31 82 bp Feature: domain Description: GIIM Note: maturase Location: 13233-13467 bp Feature: domain Description: GIIM Note: maturase Location: 1 3233-1 3467 bp Feature: domain Description: HNHc Note: nucleases Location: 13677-13836 bp Feature: domain Description: HNHc Note: nucleases Location: 1 3677-1 3836 bp Feature: gene Location: 13849-14034 bp Feature: gene Location: 14072-14170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CP034250.1 Salmonella enterica subsp. enterica serovar Derby strain Sa64 chromosome, complete genome (4824198 bp)
Overview 1 RT 1: 4023628-4029992 bp Neighborhood of RT #1 [4023628, 4029997] YjeJ DUF4156 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 4023628-4024485 bp Ori: AZK52349.1 Feature: domain Description: YjeJ Location: 4023631-4024474 bp Feature: domain Description: YjeJ Location: 402 3631-402 4474 bp Feature: gene Location: 4024533-4024886 bp Ori: AZK52350.1 Feature: domain Description: DUF4156 Location: 4024602-4024878 bp Feature: domain Description: DUF4156 Location: 402 4602 -402 4878 bp Feature: gene Location: 4025220-4026917 bp Ori: AZK52351.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4025283-4025517 bp Feature: domain Description: RVT_N Location: 402 52 83-402 5517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4025571-4026216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402 5571-402 62 16 bp Feature: domain Description: GIIM Note: maturase Location: 4026270-4026501 bp Feature: domain Description: GIIM Note: maturase Location: 402 62 70-402 6501 bp Feature: domain Description: HNHc Note: nucleases Location: 4026711-4026873 bp Feature: domain Description: HNHc Note: nucleases Location: 402 6711-402 6873 bp Feature: gene Location: 4028013-4029660 bp Feature: domain Description: groEL Location: 4028019-4029504 bp Feature: domain Description: groEL Location: 402 8019-402 9504 bp Feature: gene Location: 4029704-4029997 bp Ori: AZK52352.1 Feature: domain Description: groES Location: 4029707-4029992 bp Feature: domain Description: groES Location: 402 9707-402 9992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjeJ (pfam15922), DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: CP034252.1 Salmonella enterica subsp. enterica serovar Derby strain Sa64 plasmid pSa64-96, complete sequence (96517 bp)
Overview 1 RT 1: 38449-42107 bp Neighborhood of RT #1 [38449, 42109] RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 38449-38547 bp Feature: gene Location: 38585-38770 bp Feature: gene Location: 38748-40415 bp Ori: AZK53383.1 Gene: ltrA Feature: domain Description: RVT_N Location: 38796-39033 bp Feature: domain Description: RVT_N Location: 3 8796-3 903 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39084-39726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9084-3 9726 bp Feature: domain Description: GIIM Note: maturase Location: 39777-40011 bp Feature: domain Description: GIIM Note: maturase Location: 3 9777-40011 bp Feature: domain Description: HNHc Note: nucleases Location: 40221-40380 bp Feature: domain Description: HNHc Note: nucleases Location: 40221-403 80 bp Feature: gene Location: 41129-41635 bp Feature: gene Location: 41582-42109 bp Ori: AZK53384.1 Gene: ssb Feature: domain Description: PRK13732 Location: 41585-42107 bp Feature: domain Description: PRK13 73 2 Location: 41585-42107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)