myRT

myRT report for GCA_003931855.1_ASM393185v1

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Seq: CP034248.1 Paenibacillus lentus strain DSM 25539 chromosome, complete genome (5288676 bp)
Overview 1 RT 1: 2165743-2170995 bp 2 RT 2: 3168774-3170809 bp 3 RT 3: 3352430-3356841 bp Neighborhood of RT #1 [2165743, 2171030] PQQ PQQ PQQ_3 PQQ_3 RVT-GII YfdV GerA Neighborhood of RT #2 [3168774, 3170809] HU PRK13251 RVT-GII GIIM Neighborhood of RT #3 [3352430, 3356841] Tas HTH_ICLR RVT-UG13 HTH_XRE Feature: gene Location: 2165743-2166450 bp Ori: AZK46416.1 Feature: domain Description: PQQ Location: 2165908-2166106 bp Feature: domain Description: PQQ Location: 21 65908-21 661 06 bp Feature: gene Location: 2166381-2167247 bp Ori: AZK46417.1 Feature: domain Description: PQQ Location: 2166393-2166624 bp Feature: domain Description: PQQ Location: 21 66393-21 66624 bp Feature: domain Description: PQQ_3 Location: 2166720-2166825 bp Feature: domain Description: PQQ_3 Location: 21 66720-21 66825 bp Feature: domain Description: PQQ_3 Location: 2166840-2166945 bp Feature: domain Description: PQQ_3 Location: 21 66840-21 66945 bp Feature: gene Location: 2167806-2168216 bp Ori: AZK46418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2167872-2168181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 67872-21 681 81 bp Feature: gene Location: 2168271-2169194 bp Ori: AZK46419.1 Feature: domain Description: YfdV Location: 2168280-2169174 bp Feature: domain Description: YfdV Location: 21 68280-21 691 74 bp Feature: gene Location: 2169366-2171030 bp Ori: AZK46420.1 Feature: domain Description: GerA Location: 2169591-2170995 bp Feature: domain Description: GerA Location: 21 69591 -21 70995 bp Feature: gene Location: 3168774-3169046 bp Ori: AZK47168.1 Feature: domain Description: HU Location: 3168780-3169035 bp Feature: domain Description: HU Location: 31 68780-31 69035 bp Feature: gene Location: 3169154-3169411 bp Ori: AZK47169.1 Gene: mtrB Feature: domain Description: PRK13251 Location: 3169199-3169409 bp Feature: domain Description: PRK1 3251 Location: 31 691 99-31 69409 bp Feature: gene Location: 3169533-3169808 bp Ori: AZK49047.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3169542-3169728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 69542-31 69728 bp Feature: gene Location: 3169868-3170101 bp Feature: domain Description: GIIM Note: maturase Location: 3169883-3170039 bp Feature: domain Description: GIIM Note: maturase Location: 31 69883-31 70039 bp Feature: gene Location: 3170267-3170809 bp Feature: gene Location: 3352430-3352716 bp Feature: domain Description: Tas Location: 3352445-3352673 bp Feature: domain Description: Tas Location: 3352445-3352673 bp Feature: gene Location: 3352872-3353330 bp Ori: AZK47324.1 Feature: domain Description: HTH_ICLR Location: 3352899-3353082 bp Feature: domain Description: HTH_ICLR Location: 3352899-3353082 bp Feature: gene Location: 3353692-3355506 bp Ori: AZK47325.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 3354106-3354571 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 33541 06-3354571 bp Feature: gene Location: 3356205-3356414 bp Ori: AZK47326.1 Feature: domain Description: HTH_XRE Location: 3356214-3356382 bp Feature: domain Description: HTH_XRE Location: 335621 4-3356382 bp Feature: gene Location: 3356572-3356841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PQQ (smart00564), PQQ_3 (pfam13570), RVT-GII, YfdV (COG0679), GerA (pfam03323), HU (cd13831), PRK13251 (trp RNA-binding attenuation protein MtrB), GIIM (pfam08388), Tas (COG0667), HTH_ICLR (smart00346)
RVT-UG13, HTH_XRE (smart00530)