myRT

myRT report for GCA_003939065.1_ASM393906v1

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Seq: CP034315.1 Streptococcus agalactiae strain TFJ0901 chromosome, complete genome (2080936 bp)
Overview 1 RT 1: 28342-35513 bp 2 RT 2: 82230-89430 bp 3 RT 3: 507089-512869 bp 4 RT 4: 677938-685757 bp 5 RT 5: 1100424-1107449 bp 6 RT 6: 1117196-1120981 bp 7 RT 7: 1153269-1160641 bp 8 RT 8: 1348854-1354894 bp 9 RT 9: 1517839-1524771 bp Neighborhood of RT #1 [28342, 35518] DUF4956 PolyPPase_VTC_like RVT-GII GIIM Branch_AA_trans PRK12267 Neighborhood of RT #2 [82230, 89432] RVT-GII GIIM HepA Der Neighborhood of RT #3 [507089, 512877] rpmF rpmG RVT-GII GIIM Surf_Exclu_PgrA Surf_Exclu_PgrA Surf_Exclu_PgrA LPXTG_anchor Neighborhood of RT #4 [677938, 685780] RVT-GII GIIM NTP_transf_6 DUF2992 RVT-GII GIIM PhoE Neighborhood of RT #5 [1100424, 1107454] murG FtsQ RVT-GII GIIM FtsA PRK09330 Neighborhood of RT #6 [1117196, 1120986] YkuJ RVT-GII GIIM HisM GlnQ Neighborhood of RT #7 [1153269, 1160655] TTHA1623-like_MBL-fold PRK08643 RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #8 [1348854, 1354896] Cof PRK10416 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #9 [1517839, 1524776] PRK11856 lipoamide_DH lipoyltrans RVT-GII GIIM COG3442 MurE Feature: gene Location: 28342-29019 bp Ori: AZL54929.1 Feature: domain Description: DUF4956 Location: 28429-28792 bp Feature: domain Description: DUF4956 Location: 28429-28792 bp Feature: gene Location: 29071-29766 bp Ori: AZL54930.1 Feature: domain Description: PolyPPase_VTC_like Location: 29089-29731 bp Feature: domain Description: PolyPPase_VTC_like Location: 29089-29731 bp Feature: gene Location: 30135-31412 bp Ori: AZL56789.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30339-30954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30339-30954 bp Feature: domain Description: GIIM Note: maturase Location: 31008-31224 bp Feature: domain Description: GIIM Note: maturase Location: 31 008-31 224 bp Feature: gene Location: 31988-33325 bp Ori: AZL54931.1 Gene: brnQ Feature: domain Description: Branch_AA_trans Location: 31997-33281 bp Feature: domain Description: Branch_AA_trans Location: 31 997-33281 bp Feature: gene Location: 33521-35518 bp Ori: AZL54932.1 Gene: metG Feature: domain Description: PRK12267 Location: 33530-35513 bp Feature: domain Description: PRK1 2267 Location: 33530-3551 3 bp Feature: gene Location: 82230-82847 bp Feature: gene Location: 82852-82950 bp Feature: gene Location: 83019-84296 bp Ori: AZL56791.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83223-83838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83223-83838 bp Feature: domain Description: GIIM Note: maturase Location: 83892-84108 bp Feature: domain Description: GIIM Note: maturase Location: 83892-841 08 bp Feature: gene Location: 84869-87967 bp Ori: AZL54990.1 Feature: domain Description: HepA Location: 86411-87959 bp Feature: domain Description: HepA Location: 8641 1 -87959 bp Feature: gene Location: 88122-89432 bp Ori: AZL54991.1 Feature: domain Description: Der Location: 88125-89430 bp Feature: domain Description: Der Location: 881 25-89430 bp Feature: gene Location: 507089-507271 bp Ori: AZL55388.1 Gene: rpmF Feature: domain Description: rpmF Location: 507092-507254 bp Feature: domain Description: rpmF Location: 507092-507254 bp Feature: gene Location: 507287-507436 bp Ori: AZL55389.1 Gene: rpmG Feature: domain Description: rpmG Location: 507290-507434 bp Feature: domain Description: rpmG Location: 507290-507434 bp Feature: gene Location: 507736-509013 bp Ori: AZL56815.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507940-508555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507940-508555 bp Feature: domain Description: GIIM Note: maturase Location: 508609-508825 bp Feature: domain Description: GIIM Note: maturase Location: 508609-508825 bp Feature: gene Location: 509574-510035 bp Feature: gene Location: 510040-512877 bp Ori: AZL55391.1 Feature: domain Description: Surf_Exclu_PgrA Location: 510142-510517 bp Feature: domain Description: Surf_Exclu_PgrA Location: 51 01 42-51 051 7 bp Feature: domain Description: Surf_Exclu_PgrA Location: 510619-510922 bp Feature: domain Description: Surf_Exclu_PgrA Location: 51 061 9-51 0922 bp Feature: domain Description: Surf_Exclu_PgrA Location: 510994-512203 bp Feature: domain Description: Surf_Exclu_PgrA Location: 51 0994-51 2203 bp Feature: domain Description: LPXTG_anchor Location: 512776-512869 bp Feature: domain Description: LPXTG_anchor Location: 51 2776-51 2869 bp Feature: gene Location: 677938-679215 bp Ori: AZL56823.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678142-678757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6781 42-678757 bp Feature: domain Description: GIIM Note: maturase Location: 678811-679027 bp Feature: domain Description: GIIM Note: maturase Location: 67881 1 -679027 bp Feature: gene Location: 679653-679805 bp Feature: gene Location: 679905-680084 bp Feature: gene Location: 681240-681791 bp Ori: AZL55534.1 Feature: domain Description: NTP_transf_6 Location: 681300-681780 bp Feature: domain Description: NTP_transf_6 Location: 681 300-681 780 bp Feature: gene Location: 682011-682430 bp Ori: AZL55535.1 Feature: domain Description: DUF2992 Location: 682020-682428 bp Feature: domain Description: DUF2992 Location: 682020-682428 bp Feature: gene Location: 682994-684271 bp Ori: AZL56825.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683198-683813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6831 98-68381 3 bp Feature: domain Description: GIIM Note: maturase Location: 683867-684083 bp Feature: domain Description: GIIM Note: maturase Location: 683867-684083 bp Feature: gene Location: 684532-684966 bp Feature: gene Location: 685088-685780 bp Ori: AZL55536.1 Feature: domain Description: PhoE Location: 685097-685757 bp Feature: domain Description: PhoE Location: 685097-685757 bp Feature: gene Location: 1100424-1101500 bp Ori: AZL55919.1 Feature: domain Description: murG Location: 1100433-1101468 bp Feature: domain Description: murG Location: 1 1 00433-1 1 01 468 bp Feature: gene Location: 1101504-1102631 bp Ori: AZL55920.1 Feature: domain Description: FtsQ Location: 1101750-1102464 bp Feature: domain Description: FtsQ Location: 1 1 01 750-1 1 02464 bp Feature: gene Location: 1103201-1104478 bp Ori: AZL56842.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103405-1104020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 03405-1 1 04020 bp Feature: domain Description: GIIM Note: maturase Location: 1104074-1104290 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 04074-1 1 04290 bp Feature: gene Location: 1104779-1106152 bp Ori: AZL55921.1 Gene: ftsA Feature: domain Description: FtsA Location: 1104782-1106147 bp Feature: domain Description: FtsA Location: 1 1 04782-1 1 061 47 bp Feature: gene Location: 1106174-1107454 bp Ori: AZL55922.1 Gene: ftsZ Feature: domain Description: PRK09330 Location: 1106186-1107449 bp Feature: domain Description: PRK09330 Location: 1 1 061 86-1 1 07449 bp Feature: gene Location: 1117196-1117300 bp Feature: gene Location: 1117338-1117568 bp Ori: AZL55933.1 Feature: domain Description: YkuJ Location: 1117344-1117566 bp Feature: domain Description: YkuJ Location: 1 1 1 7344-1 1 1 7566 bp Feature: gene Location: 1118118-1119395 bp Ori: AZL56843.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1118322-1118937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 8322-1 1 1 8937 bp Feature: domain Description: GIIM Note: maturase Location: 1118991-1119207 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 8991 -1 1 1 9207 bp Feature: gene Location: 1119567-1120259 bp Ori: AZL55934.1 Feature: domain Description: HisM Location: 1119576-1120236 bp Feature: domain Description: HisM Location: 1 1 1 9576-1 1 20236 bp Feature: gene Location: 1120252-1120986 bp Ori: AZL55935.1 Feature: domain Description: GlnQ Location: 1120267-1120981 bp Feature: domain Description: GlnQ Location: 1 1 20267-1 1 20981 bp Feature: gene Location: 1153269-1153967 bp Ori: AZL55964.1 Feature: domain Description: TTHA1623-like_MBL-fold Location: 1153368-1153959 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 1 1 53368-1 1 53959 bp Feature: gene Location: 1154135-1154899 bp Ori: AZL55965.1 Feature: domain Description: PRK08643 Location: 1154138-1154897 bp Feature: domain Description: PRK08643 Location: 1 1 541 38-1 1 54897 bp Feature: gene Location: 1155462-1156739 bp Ori: AZL56845.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155666-1156281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 55666-1 1 56281 bp Feature: domain Description: GIIM Note: maturase Location: 1156335-1156551 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 56335-1 1 56551 bp Feature: gene Location: 1156869-1159376 bp Ori: AZL55966.1 Feature: domain Description: PRK07246 Location: 1156914-1159374 bp Feature: domain Description: PRK07246 Location: 1 1 5691 4-1 1 59374 bp Feature: gene Location: 1159462-1160655 bp Ori: AZL55967.1 Feature: domain Description: PRK05764 Location: 1159468-1160641 bp Feature: domain Description: PRK05764 Location: 1 1 59468-1 1 60641 bp Feature: gene Location: 1348854-1349678 bp Ori: AZL56131.1 Feature: domain Description: Cof Location: 1348863-1349664 bp Feature: domain Description: Cof Location: 1 348863-1 349664 bp Feature: gene Location: 1349678-1351288 bp Ori: AZL56132.1 Gene: ftsY Feature: domain Description: PRK10416 Location: 1350002-1351277 bp Feature: domain Description: PRK1 041 6 Location: 1 350002-1 351 277 bp Feature: gene Location: 1351839-1353116 bp Ori: AZL56856.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1352043-1352658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 352043-1 352658 bp Feature: domain Description: GIIM Note: maturase Location: 1352712-1352928 bp Feature: domain Description: GIIM Note: maturase Location: 1 35271 2-1 352928 bp Feature: gene Location: 1353182-1353994 bp Ori: AZL56133.1 Feature: domain Description: YcgQ Location: 1353185-1353992 bp Feature: domain Description: YcgQ Location: 1 3531 85-1 353992 bp Feature: gene Location: 1353994-1354896 bp Ori: AZL56134.1 Feature: domain Description: YraQ Location: 1353997-1354894 bp Feature: domain Description: YraQ Location: 1 353997-1 354894 bp Feature: gene Location: 1517839-1519596 bp Ori: AZL56277.1 Gene: lpdA Feature: domain Description: PRK11856 Location: 1517842-1518190 bp Feature: domain Description: PRK1 1 856 Location: 1 51 7842-1 51 81 90 bp Feature: domain Description: lipoamide_DH Location: 1518217-1519576 bp Feature: domain Description: lipoamide_DH Location: 1 51 821 7-1 51 9576 bp Feature: gene Location: 1519694-1520683 bp Ori: AZL56278.1 Feature: domain Description: lipoyltrans Location: 1519709-1520657 bp Feature: domain Description: lipoyltrans Location: 1 51 9709-1 520657 bp Feature: gene Location: 1521305-1522582 bp Ori: AZL56862.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1521509-1522124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 521 509-1 5221 24 bp Feature: domain Description: GIIM Note: maturase Location: 1522178-1522394 bp Feature: domain Description: GIIM Note: maturase Location: 1 5221 78-1 522394 bp Feature: gene Location: 1522648-1523433 bp Ori: AZL56279.1 Feature: domain Description: COG3442 Location: 1522696-1523422 bp Feature: domain Description: COG3442 Location: 1 522696-1 523422 bp Feature: gene Location: 1523433-1524776 bp Ori: AZL56280.1 Feature: domain Description: MurE Location: 1523466-1524771 bp Feature: domain Description: MurE Location: 1 523466-1 524771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750), RVT-GII, GIIM (pfam08388), Branch_AA_trans (pfam05525), PRK12267 (methionyl-tRNA synthetase; Reviewed), HepA (COG0553), Der (COG1160), rpmF (PRK12286), rpmG (PRK00595)
Surf_Exclu_PgrA (TIGR04320), LPXTG_anchor (TIGR01167), NTP_transf_6 (pfam06042), DUF2992 (pfam11208), PhoE (COG0406), murG (TIGR01133), FtsQ (pfam03799), FtsA (smart00842), PRK09330 (cell division protein FtsZ; Validated), YkuJ (COG4703)
HisM (COG0765), GlnQ (COG1126), TTHA1623-like_MBL-fold (cd16322), PRK08643 ((S)-acetoin forming diacetyl reductase), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional), Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), YcgQ (COG3689), YraQ (COG0701)
PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), lipoyltrans (TIGR00545), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769)