myRT

myRT report for GCA_003940845.1_ASM394084v1

Download annotations/find similar RTs

Seq: CP034324.1 Klebsiella pneumoniae isolate KSH203 plasmid pKSH203-KPC, complete sequence (159467 bp)
Overview 1 RT 1: 45621-49823 bp 2 RT 2: 118529-122625 bp Neighborhood of RT #1 [45621, 49840] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Neighborhood of RT #2 [118529, 122750] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 45621-46292 bp Ori: AZL76695.1 Feature: domain Description: Plasmid_stab_B Location: 45636-45843 bp Feature: domain Description: Plasmid_stab_B Location: 45636-45843 bp Feature: domain Description: Plasmid_stab_B Location: 45948-46155 bp Feature: domain Description: Plasmid_stab_B Location: 45948-461 55 bp Feature: gene Location: 46295-47266 bp Ori: AZL76696.1 Feature: domain Description: StbA Location: 46298-47243 bp Feature: domain Description: StbA Location: 46298-47243 bp Feature: gene Location: 47515-48999 bp Ori: AZL76811.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47917-48607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4791 7-48607 bp Feature: gene Location: 48999-49250 bp Feature: gene Location: 49409-49840 bp Ori: AZL76698.1 Feature: domain Description: PRK10276 Location: 49460-49823 bp Feature: domain Description: PRK1 0276 Location: 49460-49823 bp Feature: gene Location: 118529-118759 bp Feature: gene Location: 119022-119279 bp Feature: gene Location: 120159-121826 bp Ori: AZL76768.1 Gene: ltrA Feature: domain Description: RVT_N Location: 120207-120444 bp Feature: domain Description: RVT_N Location: 1 20207-1 20444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120495-121137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20495-1 21 1 37 bp Feature: domain Description: GIIM Note: maturase Location: 121188-121422 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 1 88-1 21 422 bp Feature: domain Description: HNHc Note: nucleases Location: 121632-121791 bp Feature: domain Description: HNHc Note: nucleases Location: 1 21 632-1 21 791 bp Feature: gene Location: 122140-122331 bp Feature: gene Location: 122328-122750 bp Ori: AZL76770.1 Feature: domain Description: DUF1380 Location: 122331-122625 bp Feature: domain Description: DUF1 380 Location: 1 22331 -1 22625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CP034325.1 Klebsiella pneumoniae isolate KSH203 plasmid pKSH203-CTX-M-3, complete sequence (156910 bp)
Overview 1 RT 1: 84973-89175 bp Neighborhood of RT #1 [84973, 89192] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 84973-85644 bp Ori: AZL76934.1 Feature: domain Description: Plasmid_stab_B Location: 84988-85195 bp Feature: domain Description: Plasmid_stab_B Location: 84988-85195 bp Feature: domain Description: Plasmid_stab_B Location: 85300-85507 bp Feature: domain Description: Plasmid_stab_B Location: 85300-85507 bp Feature: gene Location: 85647-86618 bp Ori: AZL76935.1 Feature: domain Description: StbA Location: 85650-86595 bp Feature: domain Description: StbA Location: 85650-86595 bp Feature: gene Location: 86867-88351 bp Ori: AZL77013.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87269-87959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872 69-87959 bp Feature: gene Location: 88351-88602 bp Feature: gene Location: 88761-89192 bp Ori: AZL76937.1 Feature: domain Description: PRK10276 Location: 88812-89175 bp Feature: domain Description: PRK102 76 Location: 88812 -89175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP034327.1 Klebsiella pneumoniae isolate KSH203 chromosome, complete genome (5464059 bp)
Overview 1 RT 1: 448572-454304 bp 2 RT 2: 470561-474934 bp 3 RT 3: 928252-931028 bp 4 RT 4: 1090180-1094216 bp 5 RT 5: 4065002-4069864 bp 6 RT 6: 4390942-4395242 bp 7 RT 7: 4463979-4468087 bp 8 RT 8: 4611786-4615922 bp Neighborhood of RT #1 [448572, 454834] AAA_15 RVT-Retrons STKc_PknB_like Neighborhood of RT #2 [470561, 474939] YccC PRK10016 RVT-GII PaaY Neighborhood of RT #3 [928252, 931028] RVT-GII Neighborhood of RT #4 [1090180, 1095070] DinI RVT-GII Phage_GPA Neighborhood of RT #5 [4065002, 4069890] int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #6 [4390942, 4395242] PRK05318 RVT-GII PRK10597 Neighborhood of RT #7 [4463979, 4468089] DinI RVT-GII PRK10276 umuC Neighborhood of RT #8 [4611786, 4615924] RVT-GII PRK10276 umuC Feature: gene Location: 448572-448802 bp Feature: gene Location: 449711-451957 bp Ori: AZL77666.1 Feature: domain Description: AAA_15 Location: 449714-450722 bp Feature: domain Description: AAA_15 Location: 449714-450722 bp Feature: gene Location: 452072-453172 bp Ori: AZL77667.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 452255-452783 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 452255-452783 bp Feature: gene Location: 453419-453661 bp Feature: gene Location: 453731-454834 bp Ori: AZL77668.1 Feature: domain Description: STKc_PknB_like Location: 453863-454304 bp Feature: domain Description: STKc_PknB_like Location: 453 863 -4543 04 bp Feature: gene Location: 470561-471619 bp Ori: AZL77687.1 Feature: domain Description: YccC Location: 470567-471605 bp Feature: domain Description: YccC Location: 470567-471605 bp Feature: gene Location: 471718-472191 bp Ori: AZL77688.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 471721-472180 bp Feature: domain Description: PRK10016 Location: 471721-472180 bp Feature: gene Location: 472273-473757 bp Ori: AZL82277.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472675-473365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472675-473 3 65 bp Feature: gene Location: 473890-473982 bp Feature: gene Location: 474385-474939 bp Ori: AZL77689.1 Feature: domain Description: PaaY Location: 474403-474934 bp Feature: domain Description: PaaY Location: 474403 -47493 4 bp Feature: gene Location: 928252-928509 bp Feature: gene Location: 928662-928913 bp Feature: gene Location: 928913-930397 bp Ori: AZL82294.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929315-930005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9293 15-93 0005 bp Feature: gene Location: 930494-930832 bp Feature: gene Location: 930825-931028 bp Feature: gene Location: 1090180-1090413 bp Ori: AZL78255.1 Feature: domain Description: DinI Location: 1090225-1090408 bp Feature: domain Description: DinI Location: 1090225-1090408 bp Feature: gene Location: 1090425-1090613 bp Feature: gene Location: 1090721-1092205 bp Ori: AZL82302.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091123-1091813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091123 -1091813 bp Feature: gene Location: 1092205-1092456 bp Feature: gene Location: 1092686-1095070 bp Ori: AZL78258.1 Feature: domain Description: Phage_GPA Location: 1093250-1094216 bp Feature: domain Description: Phage_GPA Location: 1093 250-1094216 bp Feature: gene Location: 4065002-4066054 bp Ori: AZL80942.1 Feature: domain Description: int Location: 4065005-4066004 bp Feature: domain Description: int Location: 4065005-4066004 bp Feature: gene Location: 4066222-4066473 bp Feature: gene Location: 4066473-4067957 bp Ori: AZL82436.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4066875-4067565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4066875-4067565 bp Feature: gene Location: 4068056-4069000 bp Feature: gene Location: 4069012-4069890 bp Ori: AZL82437.1 Feature: domain Description: Phage_CI_repr Location: 4069039-4069222 bp Feature: domain Description: Phage_CI_repr Location: 406903 9-4069222 bp Feature: domain Description: Phage_CI_repr Location: 4069351-4069543 bp Feature: domain Description: Phage_CI_repr Location: 40693 51-4069543 bp Feature: domain Description: Phage_CI_C Location: 4069570-4069864 bp Feature: domain Description: Phage_CI_C Location: 4069570-4069864 bp Feature: gene Location: 4390942-4392303 bp Ori: AZL81233.1 Feature: domain Description: PRK05318 Location: 4390966-4392265 bp Feature: domain Description: PRK053 18 Location: 43 90966-43 92265 bp Feature: gene Location: 4392893-4393144 bp Feature: gene Location: 4393144-4394628 bp Ori: AZL82458.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4393546-4394236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 93 546-43 9423 6 bp Feature: gene Location: 4394707-4394940 bp Ori: AZL81235.1 Feature: domain Description: PRK10597 Location: 4394710-4394935 bp Feature: domain Description: PRK10597 Location: 43 94710-43 9493 5 bp Feature: gene Location: 4394952-4395242 bp Feature: gene Location: 4463979-4464221 bp Ori: AZL81304.1 Feature: domain Description: DinI Location: 4464030-4464210 bp Feature: domain Description: DinI Location: 446403 0-4464210 bp Feature: gene Location: 4464588-4464839 bp Feature: gene Location: 4464839-4466323 bp Ori: AZL82464.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4465241-4465931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4465241-446593 1 bp Feature: gene Location: 4466402-4466821 bp Ori: AZL81306.1 Feature: domain Description: PRK10276 Location: 4466405-4466816 bp Feature: domain Description: PRK10276 Location: 4466405-4466816 bp Feature: gene Location: 4466824-4468089 bp Ori: AZL81307.1 Gene: umuC Feature: domain Description: umuC Location: 4466827-4468087 bp Feature: domain Description: umuC Location: 4466827-4468087 bp Feature: gene Location: 4611786-4611875 bp Feature: gene Location: 4612423-4612674 bp Feature: gene Location: 4612674-4614158 bp Ori: AZL82470.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4613076-4613766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4613 076-4613 766 bp Feature: gene Location: 4614238-4614657 bp Ori: AZL81454.1 Feature: domain Description: PRK10276 Location: 4614241-4614652 bp Feature: domain Description: PRK10276 Location: 4614241-4614652 bp Feature: gene Location: 4614659-4615924 bp Ori: AZL81455.1 Gene: umuC Feature: domain Description: umuC Location: 4614662-4615922 bp Feature: domain Description: umuC Location: 4614662-4615922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, STKc_PknB_like (cd14014), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, PaaY (TIGR02287), DinI (pfam06183), Phage_GPA (pfam05840), int (PHA02601)
Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)