myRT

myRT report for GCA_003944565.2_ASM394456v2

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Seq: CP040808.1 Escherichia fergusonii strain EFCF056 plasmid pEF03, complete sequence (80801 bp)
Overview 1 RT 1: 36551-39375 bp Neighborhood of RT #1 [36551, 39375] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 36551-36837 bp Feature: gene Location: 37016-37211 bp Feature: gene Location: 37409-39076 bp Ori: QCZ34864.1 Gene: ltrA Feature: domain Description: RVT_N Location: 37457-37694 bp Feature: domain Description: RVT_N Location: 37457-37694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37745-38387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37745-38387 bp Feature: domain Description: GIIM Note: maturase Location: 38438-38672 bp Feature: domain Description: GIIM Note: maturase Location: 38438-38672 bp Feature: domain Description: HNHc Note: nucleases Location: 38882-39041 bp Feature: domain Description: HNHc Note: nucleases Location: 38882-39041 bp Feature: gene Location: 39054-39239 bp Feature: gene Location: 39277-39375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CP040805.1 Escherichia fergusonii strain EFCF056 chromosome, complete genome (4576669 bp)
Overview 1 RT 1: 77314-81191 bp 2 RT 2: 977315-985334 bp 3 RT 3: 1055500-1062236 bp Neighborhood of RT #1 [77314, 81196] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [977315, 985336] PRK09692 IAT_beta PRK15318 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 RVT-UG4 HTH_18 SbmC PRK09230 Neighborhood of RT #3 [1055500, 1062236] RVT-Retrons PRK10026 Feature: gene Location: 77314-78030 bp Ori: QCZ30465.1 Feature: domain Description: rph Location: 77317-78025 bp Feature: domain Description: rph Location: 77317-7802 5 bp Feature: gene Location: 78096-78737 bp Ori: QCZ30466.1 Gene: pyrE Feature: domain Description: pyrE Location: 78099-78732 bp Feature: domain Description: pyrE Location: 78099-78732 bp Feature: gene Location: 79035-79994 bp Ori: QCZ30467.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79170-79719 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79170-79719 bp Feature: gene Location: 80038-80634 bp Ori: QCZ30468.1 Gene: slmA Feature: domain Description: slmA Location: 80044-80620 bp Feature: domain Description: slmA Location: 80044-8062 0 bp Feature: gene Location: 80741-81196 bp Ori: QCZ34313.1 Feature: domain Description: dut Location: 80744-81191 bp Feature: domain Description: dut Location: 80744-81191 bp Feature: gene Location: 977315-977494 bp Feature: domain Description: PRK09692 Location: 977321-977492 bp Feature: domain Description: PRK09692 Location: 97732 1-977492 bp Feature: gene Location: 977760-981680 bp Ori: QCZ31226.1 Feature: domain Description: IAT_beta Location: 977952-978768 bp Feature: domain Description: IAT_beta Location: 977952 -978768 bp Feature: domain Description: PRK15318 Location: 978954-979086 bp Feature: domain Description: PRK15318 Location: 978954-979086 bp Feature: domain Description: Invasin_D3 Location: 979104-979404 bp Feature: domain Description: Invasin_D3 Location: 979104-979404 bp Feature: domain Description: Invasin_D3 Location: 979500-979653 bp Feature: domain Description: Invasin_D3 Location: 979500-979653 bp Feature: domain Description: Invasin_D3 Location: 979752-980046 bp Feature: domain Description: Invasin_D3 Location: 979752 -980046 bp Feature: domain Description: Invasin_D3 Location: 980055-980361 bp Feature: domain Description: Invasin_D3 Location: 980055-980361 bp Feature: domain Description: Invasin_D3 Location: 980370-980676 bp Feature: domain Description: Invasin_D3 Location: 980370-980676 bp Feature: domain Description: Invasin_D3 Location: 980691-980940 bp Feature: domain Description: Invasin_D3 Location: 980691-980940 bp Feature: gene Location: 981677-982789 bp Ori: QCZ31227.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 982070-982511 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 982 070-982 511 bp Feature: gene Location: 983010-983885 bp Ori: QCZ31228.1 Feature: domain Description: HTH_18 Location: 983109-983346 bp Feature: domain Description: HTH_18 Location: 983109-983346 bp Feature: domain Description: SbmC Location: 983421-983883 bp Feature: domain Description: SbmC Location: 98342 1-983883 bp Feature: gene Location: 984053-985336 bp Ori: QCZ31229.1 Feature: domain Description: PRK09230 Location: 984062-985334 bp Feature: domain Description: PRK092 30 Location: 984062 -985334 bp Feature: gene Location: 1055500-1055577 bp Feature: gene Location: 1056247-1056948 bp Feature: gene Location: 1056945-1058165 bp Ori: QCZ34357.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1057128-1057707 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 105712 8-1057707 bp Feature: gene Location: 1059344-1059523 bp Ori: QCZ31278.1 Feature: domain Description: PRK10026 Location: 1059377-1059521 bp Feature: domain Description: PRK1002 6 Location: 1059377-105952 1 bp Feature: gene Location: 1059714-1062236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), PRK09692 (Integrase; provisional), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), RVT-UG4
HTH_18 (pfam12833), SbmC (COG3449), PRK09230 (cytosine deaminase; Provisional), PRK10026 (arsenate reductase (glutaredoxin))

Seq: CP040807.1 Escherichia fergusonii strain EFCF056 plasmid pEF02, complete sequence (90871 bp)
Overview 1 RT 1: 78279-82373 bp Neighborhood of RT #1 [78279, 82498] RVT_N RVT-GII RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 78279-78509 bp Feature: gene Location: 78772-79029 bp Feature: gene Location: 79909-80490 bp Feature: domain Description: RVT_N Location: 79957-80194 bp Feature: domain Description: RVT_N Location: 79957-80194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80245-80491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80245-80491 bp Feature: gene Location: 80663-81574 bp Ori: QCZ34812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80690-80885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80690-80885 bp Feature: domain Description: GIIM Note: maturase Location: 80936-81170 bp Feature: domain Description: GIIM Note: maturase Location: 8093 6-81170 bp Feature: domain Description: HNHc Note: nucleases Location: 81380-81539 bp Feature: domain Description: HNHc Note: nucleases Location: 813 80-8153 9 bp Feature: gene Location: 81888-82079 bp Feature: gene Location: 82076-82498 bp Ori: QCZ34814.1 Feature: domain Description: DUF1380 Location: 82079-82373 bp Feature: domain Description: DUF13 80 Location: 82079-823 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)