myRT

myRT report for GCA_003945345.1_ASM394534v1

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Seq: AP019308.1 Paenibacillus baekrokdamisoli KCTC 33723 DNA, complete genome (7261317 bp)
Overview 1 RT 1: 846470-850180 bp 2 RT 2: 5010301-5013692 bp 3 RT 3: 5946870-5956488 bp Neighborhood of RT #1 [846470, 850188] CC3_like_SDR_a HxlR group_II_RT_mat RVT-GII D_ribokin_bact UgpA Neighborhood of RT #2 [5010301, 5014105] Lipase_GDSL_2 RVT-Retrons Pribosyltran Neighborhood of RT #3 [5946870, 5956488] RVT-GII GIIM COG3666 DDE_Tnp_1_6 Feature: gene Location: 846470-847132 bp Ori: BBH19405.1 Feature: domain Description: CC3_like_SDR_a Location: 846482-847115 bp Feature: domain Description: CC3_like_SDR_a Location: 846482-8471 1 5 bp Feature: gene Location: 847282-847446 bp Ori: BBH19406.1 Feature: domain Description: HxlR Location: 847291-847435 bp Feature: domain Description: HxlR Location: 847291 -847435 bp Feature: gene Location: 847943-848164 bp Ori: BBH19407.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 847961-848039 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 847961 -848039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848039-848105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848039-8481 05 bp Feature: gene Location: 848372-849292 bp Ori: BBH19408.1 Gene: rbsK_1 Feature: domain Description: D_ribokin_bact Location: 848393-849269 bp Feature: domain Description: D_ribokin_bact Location: 848393-849269 bp Feature: gene Location: 849313-850188 bp Ori: BBH19409.1 Feature: domain Description: UgpA Location: 849343-850180 bp Feature: domain Description: UgpA Location: 849343-8501 80 bp Feature: gene Location: 5010301-5010516 bp Feature: gene Location: 5010673-5011332 bp Ori: BBH23111.1 Feature: domain Description: Lipase_GDSL_2 Location: 5010688-5011282 bp Feature: domain Description: Lipase_GDSL_2 Location: 501 0688-501 1 282 bp Feature: gene Location: 5011615-5012625 bp Ori: BBH23112.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5011846-5012383 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 501 1 846-501 2383 bp Feature: gene Location: 5012773-5013138 bp Feature: gene Location: 5013131-5014105 bp Ori: BBH23114.1 Feature: domain Description: Pribosyltran Location: 5013536-5013692 bp Feature: domain Description: Pribosyltran Location: 501 3536-501 3692 bp Feature: gene Location: 5946870-5947118 bp Feature: gene Location: 5947108-5947398 bp Feature: gene Location: 5947423-5948751 bp Ori: BBH23924.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5947690-5948311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5947690-594831 1 bp Feature: domain Description: GIIM Note: maturase Location: 5948362-5948590 bp Feature: domain Description: GIIM Note: maturase Location: 5948362-5948590 bp Feature: gene Location: 5948832-5950295 bp Ori: BBH23925.1 Feature: domain Description: COG3666 Location: 5948841-5949306 bp Feature: domain Description: COG3666 Location: 5948841 -5949306 bp Feature: domain Description: DDE_Tnp_1_6 Location: 5949849-5950197 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 5949849-59501 97 bp Feature: gene Location: 5950678-5956488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CC3_like_SDR_a (cd05250), HxlR (pfam01638), group_II_RT_mat (TIGR04416), RVT-GII, D_ribokin_bact (TIGR02152), UgpA (COG1175), Lipase_GDSL_2 (pfam13472), RVT-Retrons, Pribosyltran (pfam00156), GIIM (pfam08388)
COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)