myRT

myRT report for GCA_003950015.1_ASM395001v1

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Seq: CP034354.1 Pseudomonas aeruginosa strain IMP-13 chromosome, complete genome (7047704 bp)
Overview 1 RT 1: 201-1989 bp 2 RT 2: 953356-960316 bp 3 RT 3: 1308645-1314475 bp 4 RT 4: 1364760-1370611 bp 5 RT 5: 2210851-2217641 bp 6 RT 6: 2872230-2878943 bp 7 RT 7: 5549805-5552910 bp 8 RT 8: 5892145-5898266 bp 9 RT 9: 6830676-6837624 bp Neighborhood of RT #1 [201, 2000] RVT-DGRs DUF551 Neighborhood of RT #2 [953356, 960324] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0387 SF2_C_SNF IS285 Neighborhood of RT #3 [1308645, 1314480] SdhE RVT_N RVT-GII YkfC HNHc YgfZ HDOD Neighborhood of RT #4 [1364760, 1370718] DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0389 SF2_C_SNF conj_PilL Neighborhood of RT #5 [2210851, 2217964] DEXHc_Snf RVT_N RVT-GII GIIM HNHc HepA SF2_C_SNF YbjD YbjD Neighborhood of RT #6 [2872230, 2878960] MFS_ShiA_like RVT_N RVT-GII YkfC HNHc YciA PRK02106 Neighborhood of RT #7 [5549805, 5552912] DUF772 RVT-GII GIIM IS5 Ada_Zn_binding Neighborhood of RT #8 [5892145, 5898266] KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Neighborhood of RT #9 [6830676, 6837635] DUF262 COG3472 HATPase_c_3 RVT-Retrons DUF4354 Feature: gene Location: 201-1310 bp Ori: AZM80461.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 378-1131 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 378-1 1 31 bp Feature: gene Location: 1415-1714 bp Feature: gene Location: 1749-2000 bp Ori: AZM80463.1 Feature: domain Description: DUF551 Location: 1836-1989 bp Feature: domain Description: DUF551 Location: 1 836-1 989 bp Feature: gene Location: 953356-954807 bp Ori: AZM81355.1 Feature: domain Description: AdoMet_MTases Location: 953479-953845 bp Feature: domain Description: AdoMet_MTases Location: 953479-953845 bp Feature: gene Location: 954912-955916 bp Feature: domain Description: DEXHc_Snf Location: 955104-955350 bp Feature: domain Description: DEXHc_Snf Location: 9551 04-955350 bp Feature: gene Location: 956534-958252 bp Ori: AZM81356.1 Gene: ltrA Feature: domain Description: RVT_N Location: 956591-956828 bp Feature: domain Description: RVT_N Location: 956591 -956828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956879-957530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956879-957530 bp Feature: domain Description: GIIM Note: maturase Location: 957584-957815 bp Feature: domain Description: GIIM Note: maturase Location: 957584-95781 5 bp Feature: domain Description: HNHc Note: nucleases Location: 958049-958205 bp Feature: domain Description: HNHc Note: nucleases Location: 958049-958205 bp Feature: gene Location: 958335-959579 bp Feature: domain Description: KOG0387 Location: 958359-958485 bp Feature: domain Description: KOG0387 Location: 958359-958485 bp Feature: domain Description: SF2_C_SNF Location: 959037-959415 bp Feature: domain Description: SF2_C_SNF Location: 959037-95941 5 bp Feature: gene Location: 959653-960324 bp Feature: domain Description: IS285 Location: 959662-960316 bp Feature: domain Description: IS285 Location: 959662-96031 6 bp Feature: gene Location: 1308645-1309097 bp Feature: gene Location: 1309081-1309335 bp Ori: AZM81651.1 Feature: domain Description: SdhE Location: 1309087-1309327 bp Feature: domain Description: SdhE Location: 1 309087-1 309327 bp Feature: gene Location: 1309425-1311131 bp Ori: AZM81652.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1309482-1309725 bp Feature: domain Description: RVT_N Location: 1 309482-1 309725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1309770-1310406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 309770-1 31 0406 bp Feature: domain Description: YkfC Location: 1310604-1310709 bp Feature: domain Description: YkfC Location: 1 31 0604-1 31 0709 bp Feature: domain Description: HNHc Note: nucleases Location: 1310919-1311075 bp Feature: domain Description: HNHc Note: nucleases Location: 1 31 091 9-1 31 1 075 bp Feature: gene Location: 1312599-1313543 bp Ori: AZM81653.1 Feature: domain Description: YgfZ Location: 1312608-1313508 bp Feature: domain Description: YgfZ Location: 1 31 2608-1 31 3508 bp Feature: gene Location: 1313644-1314480 bp Ori: AZM81654.1 Feature: domain Description: HDOD Location: 1313647-1314475 bp Feature: domain Description: HDOD Location: 1 31 3647-1 31 4475 bp Feature: gene Location: 1364760-1365071 bp Feature: gene Location: 1365209-1366243 bp Feature: domain Description: DEXHc_Snf Location: 1365428-1365689 bp Feature: domain Description: DEXHc_Snf Location: 1 365428-1 365689 bp Feature: gene Location: 1366861-1368579 bp Ori: AZM81709.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1366918-1367155 bp Feature: domain Description: RVT_N Location: 1 36691 8-1 3671 55 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1367206-1367857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 367206-1 367857 bp Feature: domain Description: GIIM Note: maturase Location: 1367911-1368142 bp Feature: domain Description: GIIM Note: maturase Location: 1 36791 1 -1 3681 42 bp Feature: domain Description: HNHc Note: nucleases Location: 1368376-1368532 bp Feature: domain Description: HNHc Note: nucleases Location: 1 368376-1 368532 bp Feature: gene Location: 1368662-1369906 bp Feature: domain Description: KOG0389 Location: 1368680-1368797 bp Feature: domain Description: KOG0389 Location: 1 368680-1 368797 bp Feature: domain Description: SF2_C_SNF Location: 1369346-1369742 bp Feature: domain Description: SF2_C_SNF Location: 1 369346-1 369742 bp Feature: gene Location: 1370140-1370718 bp Ori: AZM81710.1 Feature: domain Description: conj_PilL Location: 1370302-1370611 bp Feature: domain Description: conj_PilL Location: 1 370302-1 37061 1 bp Feature: gene Location: 2210851-2211156 bp Feature: gene Location: 2211292-2212326 bp Feature: domain Description: DEXHc_Snf Location: 2211511-2211772 bp Feature: domain Description: DEXHc_Snf Location: 221 1 51 1 -221 1 772 bp Feature: gene Location: 2212944-2214662 bp Ori: AZM82449.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2213001-2213238 bp Feature: domain Description: RVT_N Location: 221 3001 -221 3238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2213289-2213940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 3289-221 3940 bp Feature: domain Description: GIIM Note: maturase Location: 2213994-2214225 bp Feature: domain Description: GIIM Note: maturase Location: 221 3994-221 4225 bp Feature: domain Description: HNHc Note: nucleases Location: 2214459-2214615 bp Feature: domain Description: HNHc Note: nucleases Location: 221 4459-221 461 5 bp Feature: gene Location: 2214745-2215989 bp Feature: domain Description: HepA Location: 2214751-2214883 bp Feature: domain Description: HepA Location: 221 4751 -221 4883 bp Feature: domain Description: SF2_C_SNF Location: 2215429-2215825 bp Feature: domain Description: SF2_C_SNF Location: 221 5429-221 5825 bp Feature: gene Location: 2216162-2217964 bp Ori: AZM82450.1 Feature: domain Description: YbjD Location: 2216165-2216447 bp Feature: domain Description: YbjD Location: 221 61 65-221 6447 bp Feature: domain Description: YbjD Location: 2217074-2217641 bp Feature: domain Description: YbjD Location: 221 7074-221 7641 bp Feature: gene Location: 2872230-2873546 bp Ori: AZM83015.1 Feature: domain Description: MFS_ShiA_like Location: 2872299-2873493 bp Feature: domain Description: MFS_ShiA_like Location: 2872299-2873493 bp Feature: gene Location: 2874943-2876649 bp Ori: AZM83016.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2875000-2875243 bp Feature: domain Description: RVT_N Location: 2875000-2875243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875288-2875924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875288-2875924 bp Feature: domain Description: YkfC Location: 2876122-2876227 bp Feature: domain Description: YkfC Location: 28761 22-2876227 bp Feature: domain Description: HNHc Note: nucleases Location: 2876437-2876593 bp Feature: domain Description: HNHc Note: nucleases Location: 2876437-2876593 bp Feature: gene Location: 2876825-2877229 bp Ori: AZM83017.1 Feature: domain Description: YciA Location: 2876843-2877218 bp Feature: domain Description: YciA Location: 2876843-287721 8 bp Feature: gene Location: 2877275-2878960 bp Ori: AZM83018.1 Feature: domain Description: PRK02106 Location: 2877281-2878943 bp Feature: domain Description: PRK021 06 Location: 2877281 -2878943 bp Feature: gene Location: 5549805-5550317 bp Feature: domain Description: DUF772 Location: 5549955-5550141 bp Feature: domain Description: DUF772 Location: 5549955-55501 41 bp Feature: gene Location: 5550353-5550448 bp Feature: gene Location: 5550837-5552105 bp Ori: AZM85461.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5551050-5551707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5551 050-5551 707 bp Feature: domain Description: GIIM Note: maturase Location: 5551785-5552007 bp Feature: domain Description: GIIM Note: maturase Location: 5551 785-5552007 bp Feature: gene Location: 5552165-5552635 bp Feature: domain Description: IS5 Location: 5552171-5552609 bp Feature: domain Description: IS5 Location: 55521 71 -5552609 bp Feature: gene Location: 5552784-5552912 bp Feature: domain Description: Ada_Zn_binding Location: 5552793-5552910 bp Feature: domain Description: Ada_Zn_binding Location: 5552793-555291 0 bp Feature: gene Location: 5892145-5893014 bp Feature: gene Location: 5893128-5894372 bp Feature: domain Description: KOG0389 Location: 5893146-5893263 bp Feature: domain Description: KOG0389 Location: 58931 46-5893263 bp Feature: domain Description: SF2_C_SNF Location: 5893812-5894208 bp Feature: domain Description: SF2_C_SNF Location: 589381 2-5894208 bp Feature: gene Location: 5894455-5896173 bp Ori: AZM85772.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5894512-5894749 bp Feature: domain Description: RVT_N Location: 589451 2-5894749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5894800-5895451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5894800-5895451 bp Feature: domain Description: GIIM Note: maturase Location: 5895505-5895736 bp Feature: domain Description: GIIM Note: maturase Location: 5895505-5895736 bp Feature: domain Description: HNHc Note: nucleases Location: 5895970-5896126 bp Feature: domain Description: HNHc Note: nucleases Location: 5895970-58961 26 bp Feature: gene Location: 5896791-5897825 bp Feature: domain Description: DEXHc_Snf Location: 5897010-5897268 bp Feature: domain Description: DEXHc_Snf Location: 589701 0-5897268 bp Feature: gene Location: 5897961-5898266 bp Feature: gene Location: 6830676-6832340 bp Ori: AZM86553.1 Feature: domain Description: DUF262 Location: 6830781-6831366 bp Feature: domain Description: DUF262 Location: 6830781 -6831 366 bp Feature: domain Description: COG3472 Location: 6831498-6832326 bp Feature: domain Description: COG3472 Location: 6831 498-6832326 bp Feature: gene Location: 6832449-6834404 bp Ori: AZM86943.1 Feature: domain Description: HATPase_c_3 Location: 6832518-6832866 bp Feature: domain Description: HATPase_c_3 Location: 683251 8-6832866 bp Feature: gene Location: 6834585-6835538 bp Ori: AZM86554.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6834696-6835290 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6834696-6835290 bp Feature: gene Location: 6835535-6836482 bp Feature: gene Location: 6837255-6837635 bp Ori: AZM86556.1 Feature: domain Description: DUF4354 Location: 6837258-6837624 bp Feature: domain Description: DUF4354 Location: 6837258-6837624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF551 (pfam04448), AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793)
IS285 (COG3328), SdhE (COG2938), YkfC (COG3344), YgfZ (COG0354), HDOD (pfam08668), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), conj_PilL (TIGR03748), HepA (COG0553), YbjD (COG3593), MFS_ShiA_like (cd17369)
YciA (COG1607), PRK02106 (choline dehydrogenase; Validated), DUF772 (pfam05598), IS5 (COG3039), Ada_Zn_binding (pfam02805), DUF262 (pfam03235), COG3472 (Uncharacterized protein ), HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263)