myRT

myRT report for GCA_003950235.1_ASM395023v1

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Seq: CP034368.1 Pseudomonas aeruginosa strain B41226 chromosome, complete genome (6814295 bp)
Overview 1 RT 1: 329991-340299 bp 2 RT 2: 356557-364751 bp 3 RT 3: 6014963-6021364 bp Neighborhood of RT #1 [329991, 340301] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [356557, 364765] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [6014963, 6021387] DUF772 RVT-GII GIIM RVT_N RVT-GII GIIM IS5 EAL Feature: gene Location: 329991-331112 bp Ori: AZM98374.1 Feature: domain Description: COG3177 Location: 330009-331101 bp Feature: domain Description: COG31 77 Location: 330009-331 1 01 bp Feature: gene Location: 331374-331535 bp Feature: gene Location: 331838-333523 bp Ori: AZM98376.1 Gene: ltrA Feature: domain Description: RVT_N Location: 331895-332135 bp Feature: domain Description: RVT_N Location: 331 895-3321 35 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332183-332819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3321 83-33281 9 bp Feature: domain Description: GIIM Note: maturase Location: 332873-333104 bp Feature: domain Description: GIIM Note: maturase Location: 332873-3331 04 bp Feature: domain Description: HNH Note: nucleases Location: 333356-333494 bp Feature: domain Description: HNH Note: nucleases Location: 333356-333494 bp Feature: gene Location: 334604-338341 bp Ori: AZM98377.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 334712-335369 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 33471 2-335369 bp Feature: domain Description: PRK09776 Location: 335582-336053 bp Feature: domain Description: PRK09776 Location: 335582-336053 bp Feature: domain Description: PAS Location: 336098-336635 bp Feature: domain Description: PAS Location: 336098-336635 bp Feature: domain Description: PRK10060 Location: 336644-338291 bp Feature: domain Description: PRK1 0060 Location: 336644-338291 bp Feature: gene Location: 338448-340301 bp Ori: AZM98378.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 338460-340299 bp Feature: domain Description: PRK05658 Location: 338460-340299 bp Feature: gene Location: 356557-357849 bp Ori: AZM98397.1 Feature: domain Description: PRK10770 Location: 356647-357841 bp Feature: domain Description: PRK1 0770 Location: 356647-357841 bp Feature: gene Location: 357830-360631 bp Ori: AZM98398.1 Gene: lptD Feature: domain Description: LptD Location: 358025-360617 bp Feature: domain Description: LptD Location: 358025-36061 7 bp Feature: gene Location: 360764-362476 bp Ori: AZM98399.1 Gene: ltrA Feature: domain Description: RVT_N Location: 360821-361064 bp Feature: domain Description: RVT_N Location: 360821 -361 064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361109-361745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 1 09-361 745 bp Feature: domain Description: YkfC Location: 361952-362105 bp Feature: domain Description: YkfC Location: 361 952-3621 05 bp Feature: domain Description: HNH Note: nucleases Location: 362282-362420 bp Feature: domain Description: HNH Note: nucleases Location: 362282-362420 bp Feature: gene Location: 362664-362876 bp Feature: gene Location: 363749-364765 bp Ori: AZM98400.1 Feature: domain Description: COG3178 Location: 363752-364751 bp Feature: domain Description: COG31 78 Location: 363752-364751 bp Feature: gene Location: 6014963-6015475 bp Feature: domain Description: DUF772 Location: 6015113-6015299 bp Feature: domain Description: DUF772 Location: 601 51 1 3-601 5299 bp Feature: gene Location: 6015511-6015606 bp Feature: gene Location: 6015995-6017263 bp Ori: AZN03097.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6016208-6016865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601 6208-601 6865 bp Feature: domain Description: GIIM Note: maturase Location: 6016943-6017165 bp Feature: domain Description: GIIM Note: maturase Location: 601 6943-601 71 65 bp Feature: gene Location: 6017939-6019444 bp Ori: AZN03098.1 Gene: ltrA Feature: domain Description: RVT_N Location: 6018020-6018245 bp Feature: domain Description: RVT_N Location: 601 8020-601 8245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6018296-6018938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601 8296-601 8938 bp Feature: domain Description: GIIM Note: maturase Location: 6018989-6019223 bp Feature: domain Description: GIIM Note: maturase Location: 601 8989-601 9223 bp Feature: gene Location: 6019517-6019975 bp Feature: domain Description: IS5 Location: 6019523-6019949 bp Feature: domain Description: IS5 Location: 601 9523-601 9949 bp Feature: gene Location: 6020644-6021387 bp Ori: AZN03099.1 Feature: domain Description: EAL Location: 6020704-6021364 bp Feature: domain Description: EAL Location: 6020704-6021 364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), DUF772 (pfam05598), IS5 (COG3039), EAL (smart00052)