myRT

myRT report for GCA_003952305.1_ASM395230v1

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Seq: CP034435.1 Pseudomonas aeruginosa strain B14130 chromosome, complete genome (6759594 bp)
Overview 1 RT 1: 41660-47908 bp 2 RT 2: 5704631-5712831 bp 3 RT 3: 5729095-5739394 bp Neighborhood of RT #1 [41660, 48084] EAL IS5 RVT_N RVT-GII GIIM RVT-GII GIIM DUF772 Neighborhood of RT #2 [5704631, 5712839] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #3 [5729095, 5739405] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 41660-42403 bp Ori: AZN56017.1 Feature: domain Description: EAL Location: 41720-42380 bp Feature: domain Description: EAL Location: 41 720-42380 bp Feature: gene Location: 43072-43530 bp Feature: domain Description: IS5 Location: 43078-43504 bp Feature: domain Description: IS5 Location: 43078-43504 bp Feature: gene Location: 43603-45108 bp Ori: AZN56018.1 Gene: ltrA Feature: domain Description: RVT_N Location: 43684-43909 bp Feature: domain Description: RVT_N Location: 43684-43909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43960-44602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43960-44602 bp Feature: domain Description: GIIM Note: maturase Location: 44653-44887 bp Feature: domain Description: GIIM Note: maturase Location: 44653-44887 bp Feature: gene Location: 45784-47052 bp Ori: AZN56019.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45997-46654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45997-46654 bp Feature: domain Description: GIIM Note: maturase Location: 46732-46954 bp Feature: domain Description: GIIM Note: maturase Location: 46732-46954 bp Feature: gene Location: 47441-47536 bp Feature: gene Location: 47572-48084 bp Feature: domain Description: DUF772 Location: 47722-47908 bp Feature: domain Description: DUF772 Location: 47722-47908 bp Feature: gene Location: 5704631-5705647 bp Ori: AZN60762.1 Feature: domain Description: COG3178 Location: 5704634-5705633 bp Feature: domain Description: COG31 78 Location: 5704634-5705633 bp Feature: gene Location: 5706520-5706732 bp Feature: gene Location: 5706920-5708632 bp Ori: AZN60763.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5706977-5707220 bp Feature: domain Description: RVT_N Location: 5706977-5707220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5707265-5707901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5707265-5707901 bp Feature: domain Description: YkfC Location: 5708108-5708261 bp Feature: domain Description: YkfC Location: 57081 08-5708261 bp Feature: domain Description: HNH Note: nucleases Location: 5708438-5708576 bp Feature: domain Description: HNH Note: nucleases Location: 5708438-5708576 bp Feature: gene Location: 5708765-5711566 bp Ori: AZN60764.1 Gene: lptD Feature: domain Description: LptD Location: 5708960-5711552 bp Feature: domain Description: LptD Location: 5708960-571 1 552 bp Feature: gene Location: 5711547-5712839 bp Ori: AZN60765.1 Feature: domain Description: PRK10770 Location: 5711637-5712831 bp Feature: domain Description: PRK1 0770 Location: 571 1 637-571 2831 bp Feature: gene Location: 5729095-5730948 bp Ori: AZN60784.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 5729107-5730946 bp Feature: domain Description: PRK05658 Location: 57291 07-5730946 bp Feature: gene Location: 5731055-5734792 bp Ori: AZN60785.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5731163-5731820 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5731 1 63-5731 820 bp Feature: domain Description: PRK09776 Location: 5732033-5732504 bp Feature: domain Description: PRK09776 Location: 5732033-5732504 bp Feature: domain Description: PAS Location: 5732549-5733086 bp Feature: domain Description: PAS Location: 5732549-5733086 bp Feature: domain Description: PRK10060 Location: 5733095-5734742 bp Feature: domain Description: PRK1 0060 Location: 5733095-5734742 bp Feature: gene Location: 5735873-5737558 bp Ori: AZN60786.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5735930-5736170 bp Feature: domain Description: RVT_N Location: 5735930-57361 70 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5736218-5736854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573621 8-5736854 bp Feature: domain Description: GIIM Note: maturase Location: 5736908-5737139 bp Feature: domain Description: GIIM Note: maturase Location: 5736908-57371 39 bp Feature: domain Description: HNH Note: nucleases Location: 5737391-5737529 bp Feature: domain Description: HNH Note: nucleases Location: 5737391 -5737529 bp Feature: gene Location: 5737861-5738022 bp Feature: gene Location: 5738284-5739405 bp Ori: AZN60788.1 Feature: domain Description: COG3177 Location: 5738302-5739394 bp Feature: domain Description: COG31 77 Location: 5738302-5739394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EAL (smart00052), IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), YkfC (COG3344), HNH (pfam01844), LptD (COG1452)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), COG3177 (Fic family protein )