myRT

myRT report for GCA_003952325.1_ASM395232v1

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Seq: CP034436.1 Pseudomonas aeruginosa strain B17932 chromosome, complete genome (6744658 bp)
Overview 1 RT 1: 5571373-5579573 bp 2 RT 2: 5595837-5606136 bp 3 RT 3: 6671791-6678039 bp Neighborhood of RT #1 [5571373, 5579581] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [5595837, 5606147] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Neighborhood of RT #3 [6671791, 6678215] EAL IS5 RVT_N RVT-GII GIIM RVT-GII GIIM DUF772 Feature: gene Location: 5571373-5572389 bp Ori: AZN48710.1 Feature: domain Description: COG3178 Location: 5571376-5572375 bp Feature: domain Description: COG31 78 Location: 5571 376-5572375 bp Feature: gene Location: 5573262-5573474 bp Feature: gene Location: 5573662-5575374 bp Ori: AZN48711.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5573719-5573962 bp Feature: domain Description: RVT_N Location: 557371 9-5573962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5574007-5574643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5574007-5574643 bp Feature: domain Description: YkfC Location: 5574850-5575003 bp Feature: domain Description: YkfC Location: 5574850-5575003 bp Feature: domain Description: HNH Note: nucleases Location: 5575180-5575318 bp Feature: domain Description: HNH Note: nucleases Location: 55751 80-557531 8 bp Feature: gene Location: 5575507-5578308 bp Ori: AZN48712.1 Gene: lptD Feature: domain Description: LptD Location: 5575702-5578294 bp Feature: domain Description: LptD Location: 5575702-5578294 bp Feature: gene Location: 5578289-5579581 bp Ori: AZN48713.1 Feature: domain Description: PRK10770 Location: 5578379-5579573 bp Feature: domain Description: PRK1 0770 Location: 5578379-5579573 bp Feature: gene Location: 5595837-5597690 bp Ori: AZN48732.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 5595849-5597688 bp Feature: domain Description: PRK05658 Location: 5595849-5597688 bp Feature: gene Location: 5597797-5601534 bp Ori: AZN48733.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5597905-5598562 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5597905-5598562 bp Feature: domain Description: PRK09776 Location: 5598775-5599246 bp Feature: domain Description: PRK09776 Location: 5598775-5599246 bp Feature: domain Description: PAS Location: 5599291-5599828 bp Feature: domain Description: PAS Location: 5599291 -5599828 bp Feature: domain Description: PRK10060 Location: 5599837-5601484 bp Feature: domain Description: PRK1 0060 Location: 5599837-5601 484 bp Feature: gene Location: 5602615-5604300 bp Ori: AZN48734.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5602672-5602912 bp Feature: domain Description: RVT_N Location: 5602672-560291 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5602960-5603596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5602960-5603596 bp Feature: domain Description: GIIM Note: maturase Location: 5603650-5603881 bp Feature: domain Description: GIIM Note: maturase Location: 5603650-5603881 bp Feature: domain Description: HNH Note: nucleases Location: 5604133-5604271 bp Feature: domain Description: HNH Note: nucleases Location: 56041 33-5604271 bp Feature: gene Location: 5604603-5604764 bp Feature: gene Location: 5605026-5606147 bp Ori: AZN48736.1 Feature: domain Description: COG3177 Location: 5605044-5606136 bp Feature: domain Description: COG31 77 Location: 5605044-56061 36 bp Feature: gene Location: 6671791-6672534 bp Ori: AZN49683.1 Feature: domain Description: EAL Location: 6671851-6672511 bp Feature: domain Description: EAL Location: 6671 851 -667251 1 bp Feature: gene Location: 6673203-6673661 bp Feature: domain Description: IS5 Location: 6673209-6673635 bp Feature: domain Description: IS5 Location: 6673209-6673635 bp Feature: gene Location: 6673734-6675239 bp Ori: AZN49684.1 Gene: ltrA Feature: domain Description: RVT_N Location: 6673815-6674040 bp Feature: domain Description: RVT_N Location: 667381 5-6674040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6674091-6674733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6674091 -6674733 bp Feature: domain Description: GIIM Note: maturase Location: 6674784-6675018 bp Feature: domain Description: GIIM Note: maturase Location: 6674784-667501 8 bp Feature: gene Location: 6675915-6677183 bp Ori: AZN49685.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6676128-6676785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66761 28-6676785 bp Feature: domain Description: GIIM Note: maturase Location: 6676863-6677085 bp Feature: domain Description: GIIM Note: maturase Location: 6676863-6677085 bp Feature: gene Location: 6677572-6677667 bp Feature: gene Location: 6677703-6678215 bp Feature: domain Description: DUF772 Location: 6677853-6678039 bp Feature: domain Description: DUF772 Location: 6677853-6678039 bp Sorry, 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Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), EAL (smart00052), IS5 (COG3039), DUF772 (pfam05598)