myRT

myRT report for GCA_003953885.1_ASM395388v1

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Seq: CP032760.1 Halocella sp. SP3-1 chromosome, complete genome (4035760 bp)
Overview 1 RT 1: 2105729-2128690 bp 2 RT 2: 2143688-2151734 bp 3 RT 3: 2374629-2385253 bp 4 RT 4: 2718682-2724159 bp 5 RT 5: 3043104-3050179 bp Neighborhood of RT #1 [2105729, 2128695] UPF0175 COG2405 RVT-GII GIIM Acetyltransf_10 PIN_3 CTE7 RVT-GII GIIM zinc_ribbon_2 zf-ribbon_3 RVT-GII GIIM Acetyltransf_1 YHI9 RVT-GII GIIM DUF2087 ATC_hydrolase NT_KNTase_like HEPN RVT-GII GIIM UPF0175 COG2405 RVT-GII GIIM PIN_RfVapC2-like VagC Neighborhood of RT #2 [2143688, 2152039] NADPH_oxidoreductase_1 LysE RVT-GII GIIM group_II_RT_mat LUD_dom RVT-GII GIIM RVT-GII Y2_Tnp DUF1980 Neighborhood of RT #3 [2374629, 2385530] InsE RVT-GII GIIM RVT-GII SpoT Elf1 Zn_Tnp_IS91 Y2_Tnp integrase_gron integrase_gron RVT_N RVT-GII GIIM GATase1_PfpI_2 GIIM Neighborhood of RT #4 [2718682, 2724251] GDPD_GDE4_like_1 RVT-GII GIIM PHP_HisPPase_AMP Neighborhood of RT #5 [3043104, 3050179] AraC YdeE TIGR04076 RVT-GII GIIM HTH_ARAC AraC_E_bind RVT-GII GIIM RVT-GII GIIM InsE Feature: gene Location: 2105729-2105956 bp Ori: AZO94902.1 Feature: domain Description: UPF0175 Location: 2105777-2105951 bp Feature: domain Description: UPF01 75 Location: 21 05777-21 05951 bp Feature: gene Location: 2105949-2106398 bp Ori: AZO94903.1 Feature: domain Description: COG2405 Location: 2105964-2106387 bp Feature: domain Description: COG2405 Location: 21 05964-21 06387 bp Feature: gene Location: 2106997-2108292 bp Ori: AZO94904.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2107252-2107912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 07252-21 0791 2 bp Feature: domain Description: GIIM Note: maturase Location: 2107996-2108200 bp Feature: domain Description: GIIM Note: maturase Location: 21 07996-21 08200 bp Feature: gene Location: 2108548-2108970 bp Ori: AZO94905.1 Feature: domain Description: Acetyltransf_10 Location: 2108683-2108923 bp Feature: domain Description: Acetyltransf_1 0 Location: 21 08683-21 08923 bp Feature: gene Location: 2109212-2109631 bp Ori: AZO94906.1 Feature: domain Description: PIN_3 Location: 2109230-2109560 bp Feature: domain Description: PIN_3 Location: 21 09230-21 09560 bp Feature: gene Location: 2109606-2109854 bp Feature: gene Location: 2110151-2110825 bp Ori: AZO94908.1 Feature: domain Description: CTE7 Location: 2110175-2110811 bp Feature: domain Description: CTE7 Location: 21 1 01 75-21 1 081 1 bp Feature: gene Location: 2111431-2112744 bp Ori: AZO94909.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2111686-2112388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 1 686-21 1 2388 bp Feature: domain Description: GIIM Note: maturase Location: 2112478-2112679 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 2478-21 1 2679 bp Feature: gene Location: 2112870-2113505 bp Ori: AZO94910.1 Feature: domain Description: zinc_ribbon_2 Location: 2112876-2112942 bp Feature: domain Description: zinc_ribbon_2 Location: 21 1 2876-21 1 2942 bp Feature: domain Description: zf-ribbon_3 Location: 2113389-2113413 bp Feature: domain Description: zf-ribbon_3 Location: 21 1 3389-21 1 341 3 bp Feature: gene Location: 2114081-2115376 bp Ori: AZO94911.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2114336-2114996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 4336-21 1 4996 bp Feature: domain Description: GIIM Note: maturase Location: 2115080-2115284 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 5080-21 1 5284 bp Feature: gene Location: 2115555-2116448 bp Feature: gene Location: 2116623-2117147 bp Ori: AZO94913.1 Feature: domain Description: Acetyltransf_1 Location: 2116764-2117064 bp Feature: domain Description: Acetyltransf_1 Location: 21 1 6764-21 1 7064 bp Feature: gene Location: 2117375-2118235 bp Ori: AZO94914.1 Feature: domain Description: YHI9 Location: 2117387-2118218 bp Feature: domain Description: YHI9 Location: 21 1 7387-21 1 821 8 bp Feature: gene Location: 2118833-2120146 bp Ori: AZO94915.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2119088-2119790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 9088-21 1 9790 bp Feature: domain Description: GIIM Note: maturase Location: 2119880-2120081 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 9880-21 20081 bp Feature: gene Location: 2120272-2120601 bp Ori: AZO94916.1 Feature: domain Description: DUF2087 Location: 2120386-2120587 bp Feature: domain Description: DUF2087 Location: 21 20386-21 20587 bp Feature: gene Location: 2120619-2121056 bp Ori: AZO94917.1 Feature: domain Description: ATC_hydrolase Location: 2120649-2121027 bp Feature: domain Description: ATC_hydrolase Location: 21 20649-21 21 027 bp Feature: gene Location: 2122363-2122698 bp Ori: AZO94920.1 Feature: domain Description: NT_KNTase_like Location: 2122402-2122690 bp Feature: domain Description: NT_KNTase_like Location: 21 22402-21 22690 bp Feature: gene Location: 2122688-2123101 bp Ori: AZO94921.1 Feature: domain Description: HEPN Location: 2122721-2123090 bp Feature: domain Description: HEPN Location: 21 22721 -21 23090 bp Feature: gene Location: 2123832-2125145 bp Ori: AZO94922.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2124087-2124789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 24087-21 24789 bp Feature: domain Description: GIIM Note: maturase Location: 2124879-2125080 bp Feature: domain Description: GIIM Note: maturase Location: 21 24879-21 25080 bp Feature: gene Location: 2125353-2125580 bp Ori: AZO94923.1 Feature: domain Description: UPF0175 Location: 2125401-2125575 bp Feature: domain Description: UPF01 75 Location: 21 25401 -21 25575 bp Feature: gene Location: 2125573-2126022 bp Ori: AZO94924.1 Feature: domain Description: COG2405 Location: 2125588-2126011 bp Feature: domain Description: COG2405 Location: 21 25588-21 2601 1 bp Feature: gene Location: 2126621-2127916 bp Ori: AZO94925.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2126876-2127536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 26876-21 27536 bp Feature: domain Description: GIIM Note: maturase Location: 2127620-2127824 bp Feature: domain Description: GIIM Note: maturase Location: 21 27620-21 27824 bp Feature: gene Location: 2128070-2128468 bp Ori: AZO94926.1 Feature: domain Description: PIN_RfVapC2-like Location: 2128082-2128463 bp Feature: domain Description: PIN_RfVapC2-like Location: 21 28082-21 28463 bp Feature: gene Location: 2128468-2128695 bp Ori: AZO94927.1 Feature: domain Description: VagC Location: 2128480-2128690 bp Feature: domain Description: VagC Location: 21 28480-21 28690 bp Feature: gene Location: 2143688-2144317 bp Ori: AZO94939.1 Feature: domain Description: NADPH_oxidoreductase_1 Location: 2143706-2144315 bp Feature: domain Description: NADPH_oxidoreductase_1 Location: 21 43706-21 4431 5 bp Feature: gene Location: 2144615-2145265 bp Ori: AZO94940.1 Feature: domain Description: LysE Location: 2144675-2145224 bp Feature: domain Description: LysE Location: 21 44675-21 45224 bp Feature: gene Location: 2145868-2147163 bp Ori: AZO94941.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2146123-2146783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 461 23-21 46783 bp Feature: domain Description: GIIM Note: maturase Location: 2146867-2147071 bp Feature: domain Description: GIIM Note: maturase Location: 21 46867-21 47071 bp Feature: gene Location: 2147747-2148434 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2147840-2148011 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 21 47840-21 4801 1 bp Feature: gene Location: 2148618-2149259 bp Ori: AZO94942.1 Feature: domain Description: LUD_dom Location: 2148657-2149239 bp Feature: domain Description: LUD_dom Location: 21 48657-21 49239 bp Feature: gene Location: 2149471-2150069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2149492-2149684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 49492-21 49684 bp Feature: domain Description: GIIM Note: maturase Location: 2149765-2149996 bp Feature: domain Description: GIIM Note: maturase Location: 21 49765-21 49996 bp Feature: gene Location: 2150149-2150615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2150152-2150344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 501 52-21 50344 bp Feature: gene Location: 2150599-2151030 bp Ori: AZO94943.1 Feature: domain Description: Y2_Tnp Location: 2150608-2150803 bp Feature: domain Description: Y2_Tnp Location: 21 50608-21 50803 bp Feature: gene Location: 2151248-2152039 bp Ori: AZO94944.1 Feature: domain Description: DUF1980 Location: 2151386-2151734 bp Feature: domain Description: DUF1 980 Location: 21 51 386-21 51 734 bp Feature: gene Location: 2374629-2374878 bp Ori: AZO95117.1 Feature: domain Description: InsE Location: 2374638-2374878 bp Feature: domain Description: InsE Location: 2374638-2374878 bp Feature: gene Location: 2373755-2374629 bp Feature: gene Location: 2375487-2376782 bp Ori: AZO95118.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2375742-2376402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2375742-2376402 bp Feature: domain Description: GIIM Note: maturase Location: 2376486-2376690 bp Feature: domain Description: GIIM Note: maturase Location: 2376486-2376690 bp Feature: gene Location: 2377532-2378753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2377838-2378117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2377838-23781 1 7 bp Feature: gene Location: 2378931-2379566 bp Ori: AZO95119.1 Feature: domain Description: SpoT Location: 2378943-2379354 bp Feature: domain Description: SpoT Location: 2378943-2379354 bp Feature: domain Description: Elf1 Location: 2379387-2379540 bp Feature: domain Description: Elf1 Location: 2379387-2379540 bp Feature: gene Location: 2379873-2381048 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2379894-2380092 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2379894-2380092 bp Feature: domain Description: Y2_Tnp Location: 2380608-2380842 bp Feature: domain Description: Y2_Tnp Location: 2380608-2380842 bp Feature: gene Location: 2381041-2381878 bp Feature: domain Description: integrase_gron Location: 2381062-2381578 bp Feature: domain Description: integrase_gron Location: 2381 062-2381 578 bp Feature: domain Description: integrase_gron Location: 2381638-2381734 bp Feature: domain Description: integrase_gron Location: 2381 638-2381 734 bp Feature: gene Location: 2382701-2384173 bp Ori: AZO95120.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2382761-2383001 bp Feature: domain Description: RVT_N Location: 2382761 -2383001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2383049-2383703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2383049-2383703 bp Feature: domain Description: GIIM Note: maturase Location: 2383766-2383988 bp Feature: domain Description: GIIM Note: maturase Location: 2383766-2383988 bp Feature: gene Location: 2384419-2385009 bp Ori: AZO95121.1 Feature: domain Description: GATase1_PfpI_2 Location: 2384431-2384989 bp Feature: domain Description: GATase1 _PfpI_2 Location: 2384431 -2384989 bp Feature: gene Location: 2385124-2385530 bp Feature: domain Description: GIIM Note: maturase Location: 2385175-2385253 bp Feature: domain Description: GIIM Note: maturase Location: 23851 75-2385253 bp Feature: gene Location: 2718682-2718894 bp Ori: AZO95452.1 Feature: domain Description: GDPD_GDE4_like_1 Location: 2718685-2718880 bp Feature: domain Description: GDPD_GDE4_like_1 Location: 271 8685-271 8880 bp Feature: gene Location: 2719291-2719817 bp Feature: gene Location: 2720310-2721605 bp Ori: AZO95453.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2720565-2721225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2720565-2721 225 bp Feature: domain Description: GIIM Note: maturase Location: 2721309-2721513 bp Feature: domain Description: GIIM Note: maturase Location: 2721 309-2721 51 3 bp Feature: gene Location: 2722249-2723223 bp Feature: gene Location: 2723364-2724251 bp Ori: AZO95455.1 Feature: domain Description: PHP_HisPPase_AMP Location: 2723376-2724159 bp Feature: domain Description: PHP_HisPPase_AMP Location: 2723376-27241 59 bp Feature: gene Location: 3043104-3043964 bp Ori: AZO95742.1 Feature: domain Description: AraC Location: 3043122-3043440 bp Feature: domain Description: AraC Location: 30431 22-3043440 bp Feature: domain Description: YdeE Location: 3043491-3043959 bp Feature: domain Description: YdeE Location: 3043491 -3043959 bp Feature: gene Location: 3044450-3044797 bp Ori: AZO95743.1 Feature: domain Description: TIGR04076 Location: 3044486-3044750 bp Feature: domain Description: TIGR04076 Location: 3044486-3044750 bp Feature: gene Location: 3045028-3045516 bp Ori: AZO95744.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3045031-3045142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3045031 -30451 42 bp Feature: domain Description: GIIM Note: maturase Location: 3045205-3045427 bp Feature: domain Description: GIIM Note: maturase Location: 3045205-3045427 bp Feature: gene Location: 3046427-3047281 bp Ori: AZO95745.1 Feature: domain Description: HTH_ARAC Location: 3046493-3046739 bp Feature: domain Description: HTH_ARAC Location: 3046493-3046739 bp Feature: domain Description: AraC_E_bind Location: 3046814-3047261 bp Feature: domain Description: AraC_E_bind Location: 304681 4-3047261 bp Feature: gene Location: 3047520-3048146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3047544-3047697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3047544-3047697 bp Feature: domain Description: GIIM Note: maturase Location: 3047751-3047982 bp Feature: domain Description: GIIM Note: maturase Location: 3047751 -3047982 bp Feature: gene Location: 3048193-3049284 bp Ori: AZO95746.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3048241-3048898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3048241 -3048898 bp Feature: domain Description: GIIM Note: maturase Location: 3048979-3049210 bp Feature: domain Description: GIIM Note: maturase Location: 3048979-304921 0 bp Feature: gene Location: 3050179-3050428 bp Ori: AZO95747.1 Feature: domain Description: InsE Location: 3050188-3050428 bp Feature: domain Description: InsE Location: 30501 88-3050428 bp Feature: gene Location: 3049305-3050179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0175 (pfam03683), COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-GII, GIIM (pfam08388), Acetyltransf_10 (pfam13673), PIN_3 (pfam13470), CTE7 (TIGR02253), zinc_ribbon_2 (pfam13240), zf-ribbon_3 (pfam13248), Acetyltransf_1 (pfam00583)
YHI9 (COG0384), DUF2087 (pfam09860), ATC_hydrolase (pfam14196), NT_KNTase_like (cd05403), HEPN (smart00748), PIN_RfVapC2-like (cd18734), VagC (COG4456), NADPH_oxidoreductase_1, LysE (pfam01810), group_II_RT_mat (TIGR04416)
LUD_dom (pfam02589), Y2_Tnp (pfam04986), DUF1980 (pfam09323), InsE (COG2963), SpoT (COG0317), Elf1 (pfam05129), Zn_Tnp_IS91 (pfam14319), integrase_gron (TIGR02249), RVT_N (pfam13655), GATase1_PfpI_2 (cd03139)
GDPD_GDE4_like_1 (cd08613), PHP_HisPPase_AMP (cd07438), AraC (COG2207), YdeE (COG3708), TIGR04076 (TIGR04076 family protein), HTH_ARAC (smart00342), AraC_E_bind (smart00871)