myRT

myRT report for GCA_003956165.1_ASM395616v1

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Seq: CP025856.1 Escherichia coli strain 504838 chromosome, complete genome (5104962 bp)
Overview 1 RT 1: 2986800-2992643 bp 2 RT 2: 3908597-3911512 bp 3 RT 3: 3981958-3985355 bp 4 RT 4: 4077825-4086882 bp 5 RT 5: 4985435-4988826 bp Neighborhood of RT #1 [2986800, 2992645] Pox_D5 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Neighborhood of RT #2 [3908597, 3911577] RVT-GII GIIM PHA02517 Neighborhood of RT #3 [3981958, 3985355] PHA02517 RVT-GII GIIM Neighborhood of RT #4 [4077825, 4086887] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG8 Tra5 InsE Neighborhood of RT #5 [4985435, 4988891] LZ_Tnp_IS66 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2986800-2986982 bp Feature: gene Location: 2987369-2987521 bp Feature: domain Description: Pox_D5 Location: 2987372-2987495 bp Feature: domain Description: Pox_D5 Location: 2987372-2987495 bp Feature: gene Location: 2987759-2989390 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2988074-2988671 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2988074-2988671 bp Feature: domain Description: TIR_2 Location: 2988995-2989352 bp Feature: domain Description: TIR_2 Location: 2988995-2989352 bp Feature: gene Location: 2989977-2992310 bp Feature: domain Description: Prim_Zn_Ribbon Location: 2990067-2990175 bp Feature: domain Description: Prim_Zn_Ribbon Location: 2990067-29901 75 bp Feature: domain Description: COG3378 Location: 2990787-2992299 bp Feature: domain Description: COG3378 Location: 2990787-2992299 bp Feature: gene Location: 2992325-2992645 bp Feature: domain Description: DUF5375 Location: 2992328-2992643 bp Feature: domain Description: DUF5375 Location: 2992328-2992643 bp Feature: gene Location: 3908597-3908740 bp Feature: gene Location: 3908765-3908950 bp Feature: gene Location: 3909037-3910560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3909310-3910042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390931 0-391 0042 bp Feature: domain Description: GIIM Note: maturase Location: 3910117-3910315 bp Feature: domain Description: GIIM Note: maturase Location: 391 01 1 7-391 031 5 bp Feature: gene Location: 3910514-3910939 bp Feature: gene Location: 3911152-3911577 bp Feature: domain Description: PHA02517 Location: 3911176-3911512 bp Feature: domain Description: PHA0251 7 Location: 391 1 1 76-391 1 51 2 bp Feature: gene Location: 3981958-3982173 bp Feature: gene Location: 3982228-3982668 bp Feature: domain Description: PHA02517 Location: 3982231-3982639 bp Feature: domain Description: PHA0251 7 Location: 3982231 -3982639 bp Feature: gene Location: 3982797-3984320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3983070-3983802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3983070-3983802 bp Feature: domain Description: GIIM Note: maturase Location: 3983877-3984075 bp Feature: domain Description: GIIM Note: maturase Location: 3983877-3984075 bp Feature: gene Location: 3984614-3984985 bp Feature: gene Location: 3985056-3985355 bp Feature: gene Location: 4077825-4080407 bp Feature: domain Description: mutS1 Location: 4077876-4080396 bp Feature: domain Description: mutS1 Location: 4077876-4080396 bp Feature: gene Location: 4080552-4082012 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4080927-4081134 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 4080927-4081 1 34 bp Feature: domain Description: INT_P4_C Location: 4081353-4081890 bp Feature: domain Description: INT_P4_C Location: 4081 353-4081 890 bp Feature: gene Location: 4083268-4085286 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4083838-4084288 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4083838-4084288 bp Feature: gene Location: 4085725-4086591 bp Feature: domain Description: Tra5 Location: 4085836-4086586 bp Feature: domain Description: Tra5 Location: 4085836-4086586 bp Feature: gene Location: 4086588-4086887 bp Feature: domain Description: InsE Location: 4086615-4086882 bp Feature: domain Description: InsE Location: 408661 5-4086882 bp Feature: gene Location: 4985435-4985731 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4985615-4985681 bp Feature: domain Description: LZ_Tnp_IS66 Location: 498561 5-4985681 bp Feature: gene Location: 4985734-4986180 bp Feature: domain Description: PHA02517 Location: 4985737-4986178 bp Feature: domain Description: PHA0251 7 Location: 4985737-49861 78 bp Feature: gene Location: 4986297-4987820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4986570-4987302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4986570-4987302 bp Feature: domain Description: GIIM Note: maturase Location: 4987377-4987575 bp Feature: domain Description: GIIM Note: maturase Location: 4987377-4987575 bp Feature: gene Location: 4987774-4988199 bp Feature: gene Location: 4988412-4988891 bp Feature: domain Description: PHA02517 Location: 4988472-4988826 bp Feature: domain Description: PHA0251 7 Location: 4988472-4988826 bp 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Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), mutS1 (TIGR01070)
INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG8, Tra5 (COG2801), InsE (COG2963), LZ_Tnp_IS66 (pfam13007)

Seq: CP025857.1 Escherichia coli strain 504838 plasmid p504838_108, complete sequence (108475 bp)
Overview 1 RT 1: 90942-96142 bp Neighborhood of RT #1 [90942, 96207] PHA02517 RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp RVT-GII PHA02517 Feature: gene Location: 90942-91166 bp Feature: gene Location: 91336-91782 bp Feature: domain Description: PHA02517 Location: 91339-91780 bp Feature: domain Description: PHA02 517 Location: 91339-91780 bp Feature: gene Location: 91899-93095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91905-92577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91905-92 577 bp Feature: domain Description: GIIM Note: maturase Location: 92652-92850 bp Feature: domain Description: GIIM Note: maturase Location: 92 652 -92 850 bp Feature: gene Location: 93172-93327 bp Feature: gene Location: 93422-94630 bp Feature: domain Description: Zn_Tnp_IS91 Location: 93482-93749 bp Feature: domain Description: Zn_Tnp_IS91 Location: 93482 -93749 bp Feature: domain Description: Y2_Tnp Location: 93863-94397 bp Feature: domain Description: Y2 _Tnp Location: 93863-94397 bp Feature: gene Location: 94795-95136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95068-95131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95068-95131 bp Feature: gene Location: 95090-95515 bp Feature: gene Location: 95728-96207 bp Feature: domain Description: PHA02517 Location: 95788-96142 bp Feature: domain Description: PHA02 517 Location: 95788-96142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: CP025858.1 Escherichia coli strain 504838 plasmid p504838_88, complete sequence (88871 bp)
Overview 1 RT 1: 15017-18770 bp 2 RT 2: 44526-47441 bp 3 RT 3: 58930-62718 bp Neighborhood of RT #1 [15017, 18770] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [44526, 47506] RVT-GII GIIM PHA02517 Neighborhood of RT #3 [58930, 62783] PHA02517 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 15017-15343 bp Feature: domain Description: InsE Location: 15020-15341 bp Feature: domain Description: InsE Location: 15020-153 41 bp Feature: gene Location: 15417-15842 bp Feature: domain Description: PHA02517 Location: 15441-15777 bp Feature: domain Description: PHA02517 Location: 15441-15777 bp Feature: gene Location: 16434-17957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16707-17439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16707-1743 9 bp Feature: domain Description: GIIM Note: maturase Location: 17514-17712 bp Feature: domain Description: GIIM Note: maturase Location: 17514-17712 bp Feature: gene Location: 18152-18526 bp Feature: domain Description: PHA02517 Location: 18155-18515 bp Feature: domain Description: PHA02517 Location: 18155-18515 bp Feature: gene Location: 18603-18770 bp Feature: gene Location: 44526-44669 bp Feature: gene Location: 44694-44879 bp Feature: gene Location: 44966-46489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45239-45971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4523 9-45971 bp Feature: domain Description: GIIM Note: maturase Location: 46046-46244 bp Feature: domain Description: GIIM Note: maturase Location: 46046-46244 bp Feature: gene Location: 46443-46868 bp Feature: gene Location: 47081-47506 bp Feature: domain Description: PHA02517 Location: 47105-47441 bp Feature: domain Description: PHA02517 Location: 47105-47441 bp Feature: gene Location: 58930-59619 bp Feature: domain Description: PHA02517 Location: 58936-59617 bp Feature: domain Description: PHA02517 Location: 5893 6-59617 bp Feature: gene Location: 59695-60048 bp Feature: domain Description: PHA02517 Location: 59698-60043 bp Feature: domain Description: PHA02517 Location: 59698-60043 bp Feature: gene Location: 60243-61766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60516-61248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60516-61248 bp Feature: domain Description: GIIM Note: maturase Location: 61323-61521 bp Feature: domain Description: GIIM Note: maturase Location: 613 23 -61521 bp Feature: gene Location: 61720-62145 bp Feature: gene Location: 62358-62783 bp Feature: domain Description: PHA02517 Location: 62382-62718 bp Feature: domain Description: PHA02517 Location: 623 82-62718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)