myRT

myRT report for GCA_003956185.1_ASM395618v1

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Seq: CP025862.1 Escherichia coli strain 504237 chromosome, complete genome (5022230 bp)
Overview 1 RT 1: 2549360-2554271 bp Neighborhood of RT #1 [2549360, 2554336] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2549360-2551237 bp Feature: domain Description: LysM Location: 2549600-2549738 bp Feature: domain Description: LysM Location: 2549600-2549738 bp Feature: domain Description: IAT_beta Location: 2549819-2550644 bp Feature: domain Description: IAT_beta Location: 254981 9-2550644 bp Feature: domain Description: PRK15318 Location: 2550845-2550968 bp Feature: domain Description: PRK1 531 8 Location: 2550845-2550968 bp Feature: domain Description: Invasin_D3 Location: 2550983-2551220 bp Feature: domain Description: Invasin_D3 Location: 2550983-2551 220 bp Feature: gene Location: 2551239-2551673 bp Feature: domain Description: PHA02517 Location: 2551242-2551665 bp Feature: domain Description: PHA0251 7 Location: 2551 242-2551 665 bp Feature: gene Location: 2551796-2553319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2552069-2552801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2552069-2552801 bp Feature: domain Description: GIIM Note: maturase Location: 2552876-2553074 bp Feature: domain Description: GIIM Note: maturase Location: 2552876-2553074 bp Feature: gene Location: 2553273-2553698 bp Feature: gene Location: 2553911-2554336 bp Feature: domain Description: PHA02517 Location: 2553932-2554271 bp Feature: domain Description: PHA0251 7 Location: 2553932-2554271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CP025863.1 Escherichia coli strain 504237 plasmid p504237_142, complete sequence (142377 bp)
Overview 1 RT 1: 71091-78911 bp 2 RT 2: 99028-101661 bp 3 RT 3: 136465-139998 bp Neighborhood of RT #1 [71091, 78934] DDE_Tnp_Tn3 RVT-GII GIIM Peptidase_S6 autotrans_barl HTH_23 InsE Neighborhood of RT #2 [99028, 101661] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #3 [136465, 140108] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 71091-71282 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 71094-71202 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 71094-712 02 bp Feature: gene Location: 71502-71774 bp Feature: gene Location: 71785-73116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72070-72757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 070-72 757 bp Feature: domain Description: GIIM Note: maturase Location: 72874-73042 bp Feature: domain Description: GIIM Note: maturase Location: 72 874-73042 bp Feature: gene Location: 73915-78009 bp Feature: domain Description: Peptidase_S6 Location: 74068-76252 bp Feature: domain Description: Peptidase_S6 Location: 74068-762 52 bp Feature: domain Description: autotrans_barl Location: 76786-78007 bp Feature: domain Description: autotrans_barl Location: 76786-78007 bp Feature: gene Location: 78287-78934 bp Feature: domain Description: HTH_23 Location: 78317-78428 bp Feature: domain Description: HTH_2 3 Location: 78317-7842 8 bp Feature: domain Description: InsE Location: 78560-78911 bp Feature: domain Description: InsE Location: 78560-78911 bp Feature: gene Location: 99028-99219 bp Feature: gene Location: 99233-99388 bp Feature: gene Location: 99532-101199 bp Feature: domain Description: RVT_N Location: 99580-99817 bp Feature: domain Description: RVT_N Location: 99580-99817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99868-100510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99868-100510 bp Feature: domain Description: GIIM Note: maturase Location: 100561-100795 bp Feature: domain Description: GIIM Note: maturase Location: 100561-100795 bp Feature: domain Description: HNHc Note: nucleases Location: 101005-101164 bp Feature: domain Description: HNHc Note: nucleases Location: 101005-101164 bp Feature: gene Location: 101215-101352 bp Feature: gene Location: 101479-101661 bp Feature: gene Location: 136465-137154 bp Feature: gene Location: 137682-137954 bp Feature: gene Location: 137965-139296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138250-138937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1382 50-138937 bp Feature: domain Description: GIIM Note: maturase Location: 139054-139222 bp Feature: domain Description: GIIM Note: maturase Location: 139054-1392 2 2 bp Feature: gene Location: 139434-139805 bp Feature: domain Description: D Location: 139467-139779 bp Feature: domain Description: D Location: 139467-139779 bp Feature: gene Location: 139848-140108 bp Feature: domain Description: Ogr_Delta Location: 139857-139998 bp Feature: domain Description: Ogr_Delta Location: 139857-139998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), HTH_23 (pfam13384), InsE (COG2963), RVT_N (pfam13655), HNHc (smart00507), D (PHA02561)
Ogr_Delta (pfam04606)