myRT

myRT report for GCA_003956205.1_ASM395620v1

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Seq: CP025910.1 Escherichia coli strain 204446 chromosome, complete genome (5096741 bp)
Overview 1 RT 1: 3171330-3176615 bp Neighborhood of RT #1 [3171330, 3176632] InsE PHA02517 RVT-GII GIIM PHA02517 LysM IAT_beta PRK15318 Invasin_D3 Feature: gene Location: 3171330-3171614 bp Feature: domain Description: InsE Location: 3171342-3171603 bp Feature: domain Description: InsE Location: 31 71 342-31 71 603 bp Feature: gene Location: 3171656-3172081 bp Feature: domain Description: PHA02517 Location: 3171677-3172016 bp Feature: domain Description: PHA0251 7 Location: 31 71 677-31 7201 6 bp Feature: gene Location: 3172673-3174196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3172946-3173678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 72946-31 73678 bp Feature: domain Description: GIIM Note: maturase Location: 3173753-3173951 bp Feature: domain Description: GIIM Note: maturase Location: 31 73753-31 73951 bp Feature: gene Location: 3174319-3174753 bp Feature: domain Description: PHA02517 Location: 3174322-3174745 bp Feature: domain Description: PHA0251 7 Location: 31 74322-31 74745 bp Feature: gene Location: 3174755-3176632 bp Feature: domain Description: LysM Location: 3174995-3175133 bp Feature: domain Description: LysM Location: 31 74995-31 751 33 bp Feature: domain Description: IAT_beta Location: 3175214-3176039 bp Feature: domain Description: IAT_beta Location: 31 7521 4-31 76039 bp Feature: domain Description: PRK15318 Location: 3176240-3176363 bp Feature: domain Description: PRK1 531 8 Location: 31 76240-31 76363 bp Feature: domain Description: Invasin_D3 Location: 3176378-3176615 bp Feature: domain Description: Invasin_D3 Location: 31 76378-31 7661 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134)

Seq: CP025911.1 Escherichia coli strain 204446 plasmid p204446_146, complete sequence (146395 bp)
Overview 1 RT 1: 16993-20636 bp 2 RT 2: 57480-61082 bp 3 RT 3: 80882-88645 bp Neighborhood of RT #1 [16993, 20636] Ogr_Delta D RVT-GII GIIM Neighborhood of RT #2 [57480, 61207] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #3 [80882, 88725] HTH_23 InsE Peptidase_S6 autotrans_barl RVT-GII GIIM DDE_Tnp_Tn3 Feature: gene Location: 16993-17253 bp Feature: domain Description: Ogr_Delta Location: 17002-17143 bp Feature: domain Description: Ogr_Delta Location: 17002 -17143 bp Feature: gene Location: 17296-17667 bp Feature: domain Description: D Location: 17329-17641 bp Feature: domain Description: D Location: 1732 9-17641 bp Feature: gene Location: 17805-19202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18156-18843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18156-18843 bp Feature: domain Description: GIIM Note: maturase Location: 18960-19128 bp Feature: domain Description: GIIM Note: maturase Location: 18960-1912 8 bp Feature: gene Location: 19042-19593 bp Feature: gene Location: 19947-20636 bp Feature: gene Location: 57480-57737 bp Feature: gene Location: 57768-58043 bp Feature: gene Location: 58617-60284 bp Feature: domain Description: RVT_N Location: 58665-58902 bp Feature: domain Description: RVT_N Location: 58665-58902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58953-59595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58953-59595 bp Feature: domain Description: GIIM Note: maturase Location: 59646-59880 bp Feature: domain Description: GIIM Note: maturase Location: 59646-59880 bp Feature: domain Description: HNHc Note: nucleases Location: 60090-60249 bp Feature: domain Description: HNHc Note: nucleases Location: 60090-602 49 bp Feature: gene Location: 60597-60788 bp Feature: gene Location: 60785-61207 bp Feature: domain Description: DUF1380 Location: 60788-61082 bp Feature: domain Description: DUF1380 Location: 60788-61082 bp Feature: gene Location: 80882-81529 bp Feature: domain Description: HTH_23 Location: 80912-81023 bp Feature: domain Description: HTH_2 3 Location: 80912 -8102 3 bp Feature: domain Description: InsE Location: 81155-81506 bp Feature: domain Description: InsE Location: 81155-81506 bp Feature: gene Location: 81807-85901 bp Feature: domain Description: Peptidase_S6 Location: 81960-84144 bp Feature: domain Description: Peptidase_S6 Location: 81960-84144 bp Feature: domain Description: autotrans_barl Location: 84678-85899 bp Feature: domain Description: autotrans_barl Location: 84678-85899 bp Feature: gene Location: 86700-88097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87051-87738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87051-87738 bp Feature: domain Description: GIIM Note: maturase Location: 87855-88023 bp Feature: domain Description: GIIM Note: maturase Location: 87855-8802 3 bp Feature: gene Location: 87937-88488 bp Feature: gene Location: 88534-88725 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 88537-88645 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 88537-88645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), HNHc (smart00507), DUF1380 (pfam07128), HTH_23 (pfam13384), InsE (COG2963), Peptidase_S6 (pfam02395)
autotrans_barl (TIGR01414), DDE_Tnp_Tn3 (pfam01526)