myRT

myRT report for GCA_003956305.1_ASM395630v1

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Seq: CP025903.1 Escherichia coli strain 300709 chromosome, complete genome (4876488 bp)
Overview 1 RT 1: 4201588-4207064 bp Neighborhood of RT #1 [4201588, 4207108] Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 Pox_D5 COG3943 Feature: gene Location: 4201588-4203921 bp Feature: domain Description: Prim_Zn_Ribbon Location: 4201678-4201786 bp Feature: domain Description: Prim_Zn_Ribbon Location: 4201 678-4201 786 bp Feature: domain Description: COG3378 Location: 4202395-4203910 bp Feature: domain Description: COG3378 Location: 4202395-420391 0 bp Feature: gene Location: 4204198-4204332 bp Feature: gene Location: 4204508-4206139 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4204823-4205420 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4204823-4205420 bp Feature: domain Description: TIR_2 Location: 4205744-4206101 bp Feature: domain Description: TIR_2 Location: 4205744-42061 01 bp Feature: gene Location: 4206377-4206529 bp Feature: domain Description: Pox_D5 Location: 4206380-4206503 bp Feature: domain Description: Pox_D5 Location: 4206380-4206503 bp Feature: gene Location: 4206962-4207108 bp Feature: domain Description: COG3943 Location: 4206965-4207064 bp Feature: domain Description: COG3943 Location: 4206965-4207064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), Pox_D5 (pfam03288), COG3943 (Uncharacterized conserved protein )

Seq: CP025905.1 Escherichia coli strain 300709 plasmid p300709_60, complete sequence (60343 bp)
Overview 1 RT 1: 19861-22959 bp Neighborhood of RT #1 [19861, 23024] InsE PHA02517 RVT-GII PHA02517 Feature: gene Location: 19861-20187 bp Feature: domain Description: InsE Location: 19864-20185 bp Feature: domain Description: InsE Location: 19864-2 0185 bp Feature: gene Location: 20187-21074 bp Feature: domain Description: PHA02517 Location: 20247-21072 bp Feature: domain Description: PHA02 517 Location: 2 02 47-2 1072 bp Feature: gene Location: 21114-21953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21387-21843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1387-2 1843 bp Feature: gene Location: 21907-22332 bp Feature: gene Location: 22545-23024 bp Feature: domain Description: PHA02517 Location: 22605-22959 bp Feature: domain Description: PHA02 517 Location: 2 2 605-2 2 959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII