myRT

myRT report for GCA_003956325.1_ASM395632v1

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Seq: CP025920.1 Escherichia coli strain 103605 chromosome, complete genome (5118381 bp)
Overview 1 RT 1: 4346145-4351430 bp Neighborhood of RT #1 [4346145, 4351447] InsE PHA02517 RVT-GII GIIM PHA02517 LysM IAT_beta PRK15318 Invasin_D3 Feature: gene Location: 4346145-4346429 bp Feature: domain Description: InsE Location: 4346157-4346418 bp Feature: domain Description: InsE Location: 43461 57-434641 8 bp Feature: gene Location: 4346471-4346896 bp Feature: domain Description: PHA02517 Location: 4346492-4346831 bp Feature: domain Description: PHA0251 7 Location: 4346492-4346831 bp Feature: gene Location: 4347488-4349011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4347761-4348493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4347761 -4348493 bp Feature: domain Description: GIIM Note: maturase Location: 4348568-4348766 bp Feature: domain Description: GIIM Note: maturase Location: 4348568-4348766 bp Feature: gene Location: 4349134-4349568 bp Feature: domain Description: PHA02517 Location: 4349137-4349560 bp Feature: domain Description: PHA0251 7 Location: 43491 37-4349560 bp Feature: gene Location: 4349570-4351447 bp Feature: domain Description: LysM Location: 4349810-4349948 bp Feature: domain Description: LysM Location: 434981 0-4349948 bp Feature: domain Description: IAT_beta Location: 4350029-4350854 bp Feature: domain Description: IAT_beta Location: 4350029-4350854 bp Feature: domain Description: PRK15318 Location: 4351055-4351178 bp Feature: domain Description: PRK1 531 8 Location: 4351 055-4351 1 78 bp Feature: domain Description: Invasin_D3 Location: 4351193-4351430 bp Feature: domain Description: Invasin_D3 Location: 4351 1 93-4351 430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134)

Seq: CP025921.1 Escherichia coli strain 103605 plasmid p103605_146, complete sequence (146395 bp)
Overview 1 RT 1: 64422-68065 bp 2 RT 2: 104909-108511 bp 3 RT 3: 128311-136074 bp Neighborhood of RT #1 [64422, 68065] Ogr_Delta D RVT-GII GIIM Neighborhood of RT #2 [104909, 108636] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #3 [128311, 136154] HTH_23 InsE Peptidase_S6 autotrans_barl RVT-GII GIIM DDE_Tnp_Tn3 Feature: gene Location: 64422-64682 bp Feature: domain Description: Ogr_Delta Location: 64431-64572 bp Feature: domain Description: Ogr_Delta Location: 64431-64572 bp Feature: gene Location: 64725-65096 bp Feature: domain Description: D Location: 64758-65070 bp Feature: domain Description: D Location: 64758-65070 bp Feature: gene Location: 65234-66631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65585-66272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65585-662 72 bp Feature: domain Description: GIIM Note: maturase Location: 66389-66557 bp Feature: domain Description: GIIM Note: maturase Location: 66389-66557 bp Feature: gene Location: 66471-67022 bp Feature: gene Location: 67376-68065 bp Feature: gene Location: 104909-105166 bp Feature: gene Location: 105197-105472 bp Feature: gene Location: 106046-107713 bp Feature: domain Description: RVT_N Location: 106094-106331 bp Feature: domain Description: RVT_N Location: 106094-106331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106382-107024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106382 -10702 4 bp Feature: domain Description: GIIM Note: maturase Location: 107075-107309 bp Feature: domain Description: GIIM Note: maturase Location: 107075-107309 bp Feature: domain Description: HNHc Note: nucleases Location: 107519-107678 bp Feature: domain Description: HNHc Note: nucleases Location: 107519-107678 bp Feature: gene Location: 108026-108217 bp Feature: gene Location: 108214-108636 bp Feature: domain Description: DUF1380 Location: 108217-108511 bp Feature: domain Description: DUF1380 Location: 1082 17-108511 bp Feature: gene Location: 128311-128958 bp Feature: domain Description: HTH_23 Location: 128341-128452 bp Feature: domain Description: HTH_2 3 Location: 12 8341-12 8452 bp Feature: domain Description: InsE Location: 128584-128935 bp Feature: domain Description: InsE Location: 12 8584-12 8935 bp Feature: gene Location: 129236-133330 bp Feature: domain Description: Peptidase_S6 Location: 129389-131573 bp Feature: domain Description: Peptidase_S6 Location: 12 9389-131573 bp Feature: domain Description: autotrans_barl Location: 132107-133328 bp Feature: domain Description: autotrans_barl Location: 132 107-13332 8 bp Feature: gene Location: 134129-135526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134480-135167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134480-135167 bp Feature: domain Description: GIIM Note: maturase Location: 135284-135452 bp Feature: domain Description: GIIM Note: maturase Location: 1352 84-135452 bp Feature: gene Location: 135366-135917 bp Feature: gene Location: 135963-136154 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 135966-136074 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 135966-136074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), HNHc (smart00507), DUF1380 (pfam07128), HTH_23 (pfam13384), InsE (COG2963), Peptidase_S6 (pfam02395)
autotrans_barl (TIGR01414), DDE_Tnp_Tn3 (pfam01526)