myRT

myRT report for GCA_003956365.1_ASM395636v1

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Seq: CP025847.1 Escherichia coli strain 602354 chromosome, complete genome (5058551 bp)
Overview 1 RT 1: 4827793-4832704 bp Neighborhood of RT #1 [4827793, 4832769] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 4827793-4829670 bp Feature: domain Description: LysM Location: 4828033-4828171 bp Feature: domain Description: LysM Location: 4828033-48281 71 bp Feature: domain Description: IAT_beta Location: 4828252-4829077 bp Feature: domain Description: IAT_beta Location: 4828252-4829077 bp Feature: domain Description: PRK15318 Location: 4829278-4829401 bp Feature: domain Description: PRK1 531 8 Location: 4829278-4829401 bp Feature: domain Description: Invasin_D3 Location: 4829416-4829653 bp Feature: domain Description: Invasin_D3 Location: 482941 6-4829653 bp Feature: gene Location: 4829672-4830106 bp Feature: domain Description: PHA02517 Location: 4829675-4830098 bp Feature: domain Description: PHA0251 7 Location: 4829675-4830098 bp Feature: gene Location: 4830229-4831752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4830502-4831234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4830502-4831 234 bp Feature: domain Description: GIIM Note: maturase Location: 4831309-4831507 bp Feature: domain Description: GIIM Note: maturase Location: 4831 309-4831 507 bp Feature: gene Location: 4831706-4832131 bp Feature: gene Location: 4832344-4832769 bp Feature: domain Description: PHA02517 Location: 4832365-4832704 bp Feature: domain Description: PHA0251 7 Location: 4832365-4832704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CP025848.1 Escherichia coli strain 602354 plasmid p602354_148, complete sequence (148526 bp)
Overview 1 RT 1: 2330-5932 bp 2 RT 2: 25732-33495 bp 3 RT 3: 108856-112499 bp Neighborhood of RT #1 [2330, 6057] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [25732, 33575] HTH_23 InsE Peptidase_S6 autotrans_barl RVT-GII GIIM DDE_Tnp_Tn3 Neighborhood of RT #3 [108856, 112499] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 2330-2587 bp Feature: gene Location: 2618-2893 bp Feature: gene Location: 3467-5134 bp Feature: domain Description: RVT_N Location: 3515-3752 bp Feature: domain Description: RVT_N Location: 3515-3752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3803-4445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3803-4445 bp Feature: domain Description: GIIM Note: maturase Location: 4496-4730 bp Feature: domain Description: GIIM Note: maturase Location: 4496-4730 bp Feature: domain Description: HNHc Note: nucleases Location: 4940-5099 bp Feature: domain Description: HNHc Note: nucleases Location: 4940-5099 bp Feature: gene Location: 5447-5638 bp Feature: gene Location: 5635-6057 bp Feature: domain Description: DUF1380 Location: 5638-5932 bp Feature: domain Description: DUF1380 Location: 5638-5932 bp Feature: gene Location: 25732-26379 bp Feature: domain Description: HTH_23 Location: 25762-25873 bp Feature: domain Description: HTH_2 3 Location: 2 5762 -2 5873 bp Feature: domain Description: InsE Location: 26005-26356 bp Feature: domain Description: InsE Location: 2 6005-2 6356 bp Feature: gene Location: 26657-30751 bp Feature: domain Description: Peptidase_S6 Location: 26810-28994 bp Feature: domain Description: Peptidase_S6 Location: 2 6810-2 8994 bp Feature: domain Description: autotrans_barl Location: 29528-30749 bp Feature: domain Description: autotrans_barl Location: 2 952 8-30749 bp Feature: gene Location: 31550-32947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31901-32588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31901-32 588 bp Feature: domain Description: GIIM Note: maturase Location: 32705-32873 bp Feature: domain Description: GIIM Note: maturase Location: 32 705-32 873 bp Feature: gene Location: 32787-33338 bp Feature: gene Location: 33384-33575 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 33387-33495 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 33387-33495 bp Feature: gene Location: 108856-109116 bp Feature: domain Description: Ogr_Delta Location: 108865-109006 bp Feature: domain Description: Ogr_Delta Location: 108865-109006 bp Feature: gene Location: 109159-109530 bp Feature: domain Description: D Location: 109192-109504 bp Feature: domain Description: D Location: 109192 -109504 bp Feature: gene Location: 109668-111065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110019-110706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110019-110706 bp Feature: domain Description: GIIM Note: maturase Location: 110823-110991 bp Feature: domain Description: GIIM Note: maturase Location: 11082 3-110991 bp Feature: gene Location: 110905-111456 bp Feature: gene Location: 111810-112499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), HTH_23 (pfam13384), InsE (COG2963), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), DDE_Tnp_Tn3 (pfam01526)
Ogr_Delta (pfam04606), D (PHA02561)