myRT

myRT report for GCA_003956405.1_ASM395640v1

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Seq: CP025859.1 Escherichia coli strain 504239 chromosome, complete genome (4979815 bp)
Overview 1 RT 1: 892226-895866 bp 2 RT 2: 3541132-3545026 bp 3 RT 3: 3992131-3995045 bp Neighborhood of RT #1 [892226, 895931] COG3547 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [3541132, 3545026] LacI PBP1_GntR RVT-GII GIIM RVT-GII Neighborhood of RT #3 [3992131, 3995110] RVT-GII GIIM PHA02517 Feature: gene Location: 892226-892615 bp Feature: domain Description: COG3547 Location: 892292-892553 bp Feature: domain Description: COG3547 Location: 892292-892553 bp Feature: gene Location: 892774-893220 bp Feature: domain Description: PHA02517 Location: 892777-893218 bp Feature: domain Description: PHA0251 7 Location: 892777-89321 8 bp Feature: gene Location: 893337-894860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 893610-894342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89361 0-894342 bp Feature: domain Description: GIIM Note: maturase Location: 894417-894615 bp Feature: domain Description: GIIM Note: maturase Location: 89441 7-89461 5 bp Feature: gene Location: 894814-895239 bp Feature: gene Location: 895452-895931 bp Feature: domain Description: PHA02517 Location: 895512-895866 bp Feature: domain Description: PHA0251 7 Location: 89551 2-895866 bp Feature: gene Location: 3541132-3542163 bp Feature: domain Description: LacI Location: 3541174-3541309 bp Feature: domain Description: LacI Location: 3541 1 74-3541 309 bp Feature: domain Description: PBP1_GntR Location: 3541348-3542158 bp Feature: domain Description: PBP1 _GntR Location: 3541 348-35421 58 bp Feature: gene Location: 3542197-3542382 bp Feature: gene Location: 3542690-3543541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3542693-3543101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3542693-35431 01 bp Feature: domain Description: GIIM Note: maturase Location: 3543149-3543371 bp Feature: domain Description: GIIM Note: maturase Location: 35431 49-3543371 bp Feature: gene Location: 3543514-3543948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3543706-3543922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3543706-3543922 bp Feature: gene Location: 3544117-3544314 bp Feature: gene Location: 3544673-3545026 bp Feature: gene Location: 3992131-3992274 bp Feature: gene Location: 3992299-3992502 bp Feature: gene Location: 3992570-3994093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3992843-3993575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3992843-3993575 bp Feature: domain Description: GIIM Note: maturase Location: 3993650-3993848 bp Feature: domain Description: GIIM Note: maturase Location: 3993650-3993848 bp Feature: gene Location: 3994047-3994472 bp Feature: gene Location: 3994685-3995110 bp Feature: domain Description: PHA02517 Location: 3994709-3995045 bp Feature: domain Description: PHA0251 7 Location: 3994709-3995045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: CP025860.1 Escherichia coli strain 504239 plasmid p504239_101, complete sequence (101617 bp)
Overview 1 RT 1: 16256-20428 bp 2 RT 2: 24995-28855 bp 3 RT 3: 86661-90060 bp Neighborhood of RT #1 [16256, 20428] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [24995, 28920] DUF1281 DUF1281_C PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [86661, 90125] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 16256-16582 bp Feature: domain Description: InsE Location: 16259-16580 bp Feature: domain Description: InsE Location: 162 59-16580 bp Feature: gene Location: 16656-17081 bp Feature: domain Description: PHA02517 Location: 16680-17016 bp Feature: domain Description: PHA02 517 Location: 16680-17016 bp Feature: gene Location: 17673-19196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17946-18678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17946-18678 bp Feature: domain Description: GIIM Note: maturase Location: 18753-18951 bp Feature: domain Description: GIIM Note: maturase Location: 18753-18951 bp Feature: gene Location: 19313-19759 bp Feature: domain Description: PHA02517 Location: 19316-19757 bp Feature: domain Description: PHA02 517 Location: 19316-19757 bp Feature: gene Location: 19802-20428 bp Feature: gene Location: 24995-25723 bp Feature: domain Description: DUF1281 Location: 25088-25616 bp Feature: domain Description: DUF12 81 Location: 2 5088-2 5616 bp Feature: domain Description: DUF1281_C Location: 25622-25721 bp Feature: domain Description: DUF12 81_C Location: 2 562 2 -2 572 1 bp Feature: gene Location: 25763-26209 bp Feature: domain Description: PHA02517 Location: 25766-26207 bp Feature: domain Description: PHA02 517 Location: 2 5766-2 62 07 bp Feature: gene Location: 26326-27849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26599-27331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6599-2 7331 bp Feature: domain Description: GIIM Note: maturase Location: 27406-27604 bp Feature: domain Description: GIIM Note: maturase Location: 2 7406-2 7604 bp Feature: gene Location: 27803-28228 bp Feature: gene Location: 28441-28920 bp Feature: domain Description: PHA02517 Location: 28501-28855 bp Feature: domain Description: PHA02 517 Location: 2 8501-2 8855 bp Feature: gene Location: 86661-86852 bp Feature: gene Location: 86962-87336 bp Feature: domain Description: PHA02517 Location: 86965-87325 bp Feature: domain Description: PHA02 517 Location: 86965-8732 5 bp Feature: gene Location: 87531-89054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87804-88536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87804-88536 bp Feature: domain Description: GIIM Note: maturase Location: 88611-88809 bp Feature: domain Description: GIIM Note: maturase Location: 88611-88809 bp Feature: gene Location: 89008-89433 bp Feature: gene Location: 89646-90125 bp Feature: domain Description: PHA02517 Location: 89706-90060 bp Feature: domain Description: PHA02 517 Location: 89706-90060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DUF1281 (pfam06924), DUF1281_C (pfam18406)