myRT

myRT report for GCA_003956485.1_ASM395648v1

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Seq: CP025916.1 Escherichia coli strain 120899 chromosome, complete genome (5115137 bp)
Overview 1 RT 1: 4311735-4317020 bp Neighborhood of RT #1 [4311735, 4317037] InsE PHA02517 RVT-GII GIIM PHA02517 LysM IAT_beta PRK15318 Invasin_D3 Feature: gene Location: 4311735-4312019 bp Feature: domain Description: InsE Location: 4311747-4312008 bp Feature: domain Description: InsE Location: 431 1 747-431 2008 bp Feature: gene Location: 4312061-4312486 bp Feature: domain Description: PHA02517 Location: 4312082-4312421 bp Feature: domain Description: PHA0251 7 Location: 431 2082-431 2421 bp Feature: gene Location: 4313078-4314601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4313351-4314083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 3351 -431 4083 bp Feature: domain Description: GIIM Note: maturase Location: 4314158-4314356 bp Feature: domain Description: GIIM Note: maturase Location: 431 41 58-431 4356 bp Feature: gene Location: 4314724-4315158 bp Feature: domain Description: PHA02517 Location: 4314727-4315150 bp Feature: domain Description: PHA0251 7 Location: 431 4727-431 51 50 bp Feature: gene Location: 4315160-4317037 bp Feature: domain Description: LysM Location: 4315400-4315538 bp Feature: domain Description: LysM Location: 431 5400-431 5538 bp Feature: domain Description: IAT_beta Location: 4315619-4316444 bp Feature: domain Description: IAT_beta Location: 431 561 9-431 6444 bp Feature: domain Description: PRK15318 Location: 4316645-4316768 bp Feature: domain Description: PRK1 531 8 Location: 431 6645-431 6768 bp Feature: domain Description: Invasin_D3 Location: 4316783-4317020 bp Feature: domain Description: Invasin_D3 Location: 431 6783-431 7020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134)

Seq: CP025917.1 Escherichia coli strain 120899 plasmid p120899_146, complete sequence (146395 bp)
Overview 1 RT 1: 25361-28963 bp 2 RT 2: 48763-56526 bp 3 RT 3: 131269-134912 bp Neighborhood of RT #1 [25361, 29088] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [48763, 56606] HTH_23 InsE Peptidase_S6 autotrans_barl RVT-GII GIIM DDE_Tnp_Tn3 Neighborhood of RT #3 [131269, 134912] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 25361-25618 bp Feature: gene Location: 25649-25924 bp Feature: gene Location: 26498-28165 bp Feature: domain Description: RVT_N Location: 26546-26783 bp Feature: domain Description: RVT_N Location: 2 6546-2 6783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26834-27476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6834-2 7476 bp Feature: domain Description: GIIM Note: maturase Location: 27527-27761 bp Feature: domain Description: GIIM Note: maturase Location: 2 752 7-2 7761 bp Feature: domain Description: HNHc Note: nucleases Location: 27971-28130 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7971-2 8130 bp Feature: gene Location: 28478-28669 bp Feature: gene Location: 28666-29088 bp Feature: domain Description: DUF1380 Location: 28669-28963 bp Feature: domain Description: DUF1380 Location: 2 8669-2 8963 bp Feature: gene Location: 48763-49410 bp Feature: domain Description: HTH_23 Location: 48793-48904 bp Feature: domain Description: HTH_2 3 Location: 48793-48904 bp Feature: domain Description: InsE Location: 49036-49387 bp Feature: domain Description: InsE Location: 49036-49387 bp Feature: gene Location: 49688-53782 bp Feature: domain Description: Peptidase_S6 Location: 49841-52025 bp Feature: domain Description: Peptidase_S6 Location: 49841-52 02 5 bp Feature: domain Description: autotrans_barl Location: 52559-53780 bp Feature: domain Description: autotrans_barl Location: 52 559-53780 bp Feature: gene Location: 54581-55978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54932-55619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54932 -55619 bp Feature: domain Description: GIIM Note: maturase Location: 55736-55904 bp Feature: domain Description: GIIM Note: maturase Location: 55736-55904 bp Feature: gene Location: 55818-56369 bp Feature: gene Location: 56415-56606 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 56418-56526 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 56418-5652 6 bp Feature: gene Location: 131269-131529 bp Feature: domain Description: Ogr_Delta Location: 131278-131419 bp Feature: domain Description: Ogr_Delta Location: 1312 78-131419 bp Feature: gene Location: 131572-131943 bp Feature: domain Description: D Location: 131605-131917 bp Feature: domain Description: D Location: 131605-131917 bp Feature: gene Location: 132081-133478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132432-133119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 432 -133119 bp Feature: domain Description: GIIM Note: maturase Location: 133236-133404 bp Feature: domain Description: GIIM Note: maturase Location: 1332 36-133404 bp Feature: gene Location: 133318-133869 bp Feature: gene Location: 134223-134912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), HTH_23 (pfam13384), InsE (COG2963), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), DDE_Tnp_Tn3 (pfam01526)
Ogr_Delta (pfam04606), D (PHA02561)