myRT

myRT report for GCA_003957785.1_ASM395778v1

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Seq: CP033208.1 Enterococcus faecium strain RBWH1 plasmid pRBWH1.2, complete sequence (55808 bp)
Overview 1 RT 1: 6722-16664 bp Neighborhood of RT #1 [6722, 16664] TraG_VirD4 TraG_VirD4 RVT-GII HNH_4 TraG-D_C Feature: gene Location: 6722-8776 bp Feature: gene Location: 8776-10608 bp Ori: AZQ19089.1 Feature: domain Description: TraG_VirD4 Location: 9355-10033 bp Feature: domain Description: TraG_VirD4 Location: 9355-1 0033 bp Feature: domain Description: TraG_VirD4 Location: 10420-10585 bp Feature: domain Description: TraG_VirD4 Location: 1 0420-1 0585 bp Feature: gene Location: 11303-13219 bp Ori: AZQ19090.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11642-12377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 642-1 2377 bp Feature: domain Description: HNH_4 Location: 12971-13076 bp Feature: domain Description: HNH_4 Location: 1 2971 -1 3076 bp Feature: gene Location: 13336-14136 bp Feature: domain Description: TraG-D_C Location: 13339-13654 bp Feature: domain Description: TraG-D_C Location: 1 3339-1 3654 bp Feature: gene Location: 14133-16664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696)

Seq: CP033209.1 Enterococcus faecium strain RBWH1 plasmid pRBWH1.3, complete sequence (39621 bp)
Overview 1 RT 1: 22840-28972 bp Neighborhood of RT #1 [22840, 28977] Rve HsdM RVT-AbiP2 Tra8 PinE Feature: gene Location: 22840-23526 bp Ori: AZQ19160.1 Feature: domain Description: Rve Location: 22849-23497 bp Feature: domain Description: Rve Location: 2 2 849-2 3497 bp Feature: gene Location: 23582-25027 bp Feature: domain Description: HsdM Location: 23603-25028 bp Feature: domain Description: HsdM Location: 2 3603-2 502 8 bp Feature: gene Location: 25365-26840 bp Ori: AZQ19161.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 25713-26178 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 5713-2 6178 bp Feature: gene Location: 26818-27771 bp Ori: AZQ19162.1 Feature: domain Description: Tra8 Location: 26821-27748 bp Feature: domain Description: Tra8 Location: 2 682 1-2 7748 bp Feature: gene Location: 28414-28977 bp Ori: AZQ19163.1 Feature: domain Description: PinE Location: 28426-28972 bp Feature: domain Description: PinE Location: 2 842 6-2 8972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826), PinE (COG1961)

Seq: CP033206.1 Enterococcus faecium strain RBWH1 chromosome, complete genome (2876110 bp)
Overview 1 RT 1: 273007-278010 bp 2 RT 2: 1858842-1864172 bp 3 RT 3: 2716071-2726985 bp Neighborhood of RT #1 [273007, 278024] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Neighborhood of RT #2 [1858842, 1864243] AAA_10 RVT-GII AAA_10 TcpE Neighborhood of RT #3 [2716071, 2726999] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 273007-273160 bp Feature: gene Location: 273183-274388 bp Ori: AZQ16481.1 Feature: domain Description: HTH_XRE Location: 273228-273372 bp Feature: domain Description: HTH_XRE Location: 273 228-273 3 72 bp Feature: domain Description: Rol_Rep_N Location: 273399-273666 bp Feature: domain Description: Rol_Rep_N Location: 273 3 99-273 666 bp Feature: domain Description: Rep_trans Location: 273690-274299 bp Feature: domain Description: Rep_trans Location: 273 690-274299 bp Feature: gene Location: 275172-277082 bp Ori: AZQ16482.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275505-276243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275505-276243 bp Feature: domain Description: HNHc Note: nucleases Location: 276798-276963 bp Feature: domain Description: HNHc Note: nucleases Location: 276798-276963 bp Feature: gene Location: 277186-277410 bp Feature: gene Location: 277527-278024 bp Ori: AZQ16484.1 Feature: domain Description: ArdA Location: 277545-278010 bp Feature: domain Description: ArdA Location: 277545-278010 bp Feature: gene Location: 1858842-1859681 bp Feature: domain Description: AAA_10 Location: 1858848-1859667 bp Feature: domain Description: AAA_10 Location: 1858848-1859667 bp Feature: gene Location: 1859685-1859771 bp Feature: gene Location: 1859794-1861620 bp Ori: AZQ17938.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860094-1860793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860094-1860793 bp Feature: gene Location: 1862365-1863867 bp Feature: domain Description: AAA_10 Location: 1863694-1863865 bp Feature: domain Description: AAA_10 Location: 1863 694-1863 865 bp Feature: gene Location: 1863854-1864243 bp Ori: AZQ17939.1 Feature: domain Description: TcpE Location: 1863872-1864172 bp Feature: domain Description: TcpE Location: 1863 872-1864172 bp Feature: gene Location: 2716071-2716424 bp Ori: AZQ18711.1 Feature: domain Description: RelB_DinJ Location: 2716290-2716416 bp Feature: domain Description: RelB_DinJ Location: 2716290-2716416 bp Feature: gene Location: 2716493-2717509 bp Ori: AZQ18712.1 Feature: domain Description: FtsK_SpoIIIE Location: 2717150-2717390 bp Feature: domain Description: FtsK_SpoIIIE Location: 2717150-27173 90 bp Feature: gene Location: 2718103-2719977 bp Ori: AZQ18713.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2718469-2719165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2718469-2719165 bp Feature: domain Description: HNHc Note: nucleases Location: 2719705-2719864 bp Feature: domain Description: HNHc Note: nucleases Location: 2719705-2719864 bp Feature: gene Location: 2719989-2720075 bp Feature: gene Location: 2720103-2720459 bp Ori: AZQ18913.1 Feature: domain Description: FtsK Location: 2720115-2720334 bp Feature: domain Description: FtsK Location: 2720115-27203 3 4 bp Feature: gene Location: 2722181-2723365 bp Ori: AZQ18715.1 Feature: domain Description: HTH_XRE Location: 2722211-2722355 bp Feature: domain Description: HTH_XRE Location: 2722211-27223 55 bp Feature: domain Description: Rol_Rep_N Location: 2722388-2722652 bp Feature: domain Description: Rol_Rep_N Location: 27223 88-2722652 bp Feature: domain Description: Rep_trans Location: 2722676-2723288 bp Feature: domain Description: Rep_trans Location: 2722676-2723 288 bp Feature: gene Location: 2723362-2723475 bp Ori: AZQ18716.1 Feature: domain Description: DUF3789 Location: 2723389-2723473 bp Feature: domain Description: DUF3 789 Location: 2723 3 89-2723 473 bp Feature: gene Location: 2724245-2726155 bp Ori: AZQ18717.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2724578-2725316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2724578-27253 16 bp Feature: domain Description: HNHc Note: nucleases Location: 2725871-2726036 bp Feature: domain Description: HNHc Note: nucleases Location: 2725871-272603 6 bp Feature: gene Location: 2726259-2726483 bp Feature: gene Location: 2726496-2726999 bp Ori: AZQ18719.1 Feature: domain Description: ArdA Location: 2726514-2726985 bp Feature: domain Description: ArdA Location: 2726514-2726985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275), AAA_10 (pfam12846), TcpE (pfam12648), RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580)
FtsK (COG1674), DUF3789 (pfam12664)