myRT

myRT report for GCA_003963515.1_ASM396351v1

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Seq: CP034541.1 Brevibacillus sp. SCSIO 07484 chromosome, complete genome (3978392 bp)
Overview 1 RT 1: 585126-591383 bp 2 RT 2: 670161-675724 bp 3 RT 3: 1018706-1022211 bp 4 RT 4: 1161018-1167908 bp 5 RT 5: 1412767-1418468 bp 6 RT 6: 2974238-2980405 bp 7 RT 7: 3146098-3151748 bp 8 RT 8: 3270451-3274575 bp Neighborhood of RT #1 [585126, 591383] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM Neighborhood of RT #2 [670161, 675732] CbiX CbiX RVT-GII GIIM MhpD AtoC Neighborhood of RT #3 [1018706, 1022387] Mn_catalase DUF4025 RVT-GII GIIM YigB Neighborhood of RT #4 [1161018, 1167913] PRK07006 MalateDH_bact RVT-GII GIIM Ggt OmpR Neighborhood of RT #5 [1412767, 1418506] Hydrolase_4 SR1P RVT-GII GIIM LdcC YrpB Neighborhood of RT #6 [2974238, 2980434] nirA DUF3906 RVT-GII GIIM PRK08064 PRK08247 Neighborhood of RT #7 [3146098, 3151810] MetP PLN02805 RVT-GII GIIM PRK12344 Neighborhood of RT #8 [3270451, 3274646] SASP_tlp PBP1_ABC_uncharacterized_transporter RVT-GII GIIM spo_yunB Feature: gene Location: 585126-586295 bp Feature: domain Description: PRK06019 Location: 585177-586269 bp Feature: domain Description: PRK0601 9 Location: 5851 77-586269 bp Feature: gene Location: 586297-587595 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 586309-587581 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 586309-587581 bp Feature: gene Location: 588521-589786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588722-589340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588722-589340 bp Feature: domain Description: GIIM Note: maturase Location: 589394-589616 bp Feature: domain Description: GIIM Note: maturase Location: 589394-58961 6 bp Feature: gene Location: 590992-591126 bp Feature: gene Location: 591141-591383 bp Feature: gene Location: 670161-670511 bp Feature: gene Location: 670664-671413 bp Feature: domain Description: CbiX Location: 670697-671030 bp Feature: domain Description: CbiX Location: 670697-671 030 bp Feature: domain Description: CbiX Location: 671105-671339 bp Feature: domain Description: CbiX Location: 671 1 05-671 339 bp Feature: gene Location: 672074-673339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672275-672893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672275-672893 bp Feature: domain Description: GIIM Note: maturase Location: 672947-673169 bp Feature: domain Description: GIIM Note: maturase Location: 672947-6731 69 bp Feature: gene Location: 673616-674260 bp Feature: domain Description: MhpD Location: 673640-674249 bp Feature: domain Description: MhpD Location: 673640-674249 bp Feature: gene Location: 674284-675732 bp Feature: domain Description: AtoC Location: 674293-675724 bp Feature: domain Description: AtoC Location: 674293-675724 bp Feature: gene Location: 1018706-1019275 bp Feature: domain Description: Mn_catalase Location: 1018709-1019255 bp Feature: domain Description: Mn_catalase Location: 1 01 8709-1 01 9255 bp Feature: gene Location: 1019402-1019629 bp Feature: domain Description: DUF4025 Location: 1019429-1019570 bp Feature: domain Description: DUF4025 Location: 1 01 9429-1 01 9570 bp Feature: gene Location: 1019840-1021021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020434-1020797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 020434-1 020797 bp Feature: gene Location: 1021014-1021499 bp Feature: domain Description: GIIM Note: maturase Location: 1021107-1021329 bp Feature: domain Description: GIIM Note: maturase Location: 1 021 1 07-1 021 329 bp Feature: gene Location: 1021620-1022387 bp Feature: domain Description: YigB Location: 1021623-1022211 bp Feature: domain Description: YigB Location: 1 021 623-1 02221 1 bp Feature: gene Location: 1161018-1162301 bp Feature: domain Description: PRK07006 Location: 1161045-1162299 bp Feature: domain Description: PRK07006 Location: 1 1 61 045-1 1 62299 bp Feature: gene Location: 1162325-1163266 bp Feature: domain Description: MalateDH_bact Location: 1162340-1163258 bp Feature: domain Description: MalateDH_bact Location: 1 1 62340-1 1 63258 bp Feature: gene Location: 1163868-1165133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164069-1164687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 64069-1 1 64687 bp Feature: domain Description: GIIM Note: maturase Location: 1164741-1164963 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 64741 -1 1 64963 bp Feature: gene Location: 1165283-1166896 bp Feature: domain Description: Ggt Location: 1165331-1166891 bp Feature: domain Description: Ggt Location: 1 1 65331 -1 1 66891 bp Feature: gene Location: 1167221-1167913 bp Feature: domain Description: OmpR Location: 1167230-1167908 bp Feature: domain Description: OmpR Location: 1 1 67230-1 1 67908 bp Feature: gene Location: 1412767-1413588 bp Feature: domain Description: Hydrolase_4 Location: 1412803-1413520 bp Feature: domain Description: Hydrolase_4 Location: 1 41 2803-1 41 3520 bp Feature: gene Location: 1413695-1413880 bp Feature: domain Description: SR1P Location: 1413719-1413821 bp Feature: domain Description: SR1 P Location: 1 41 371 9-1 41 3821 bp Feature: gene Location: 1414454-1415719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414655-1415273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 4655-1 41 5273 bp Feature: domain Description: GIIM Note: maturase Location: 1415327-1415549 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 5327-1 41 5549 bp Feature: gene Location: 1415797-1417266 bp Feature: domain Description: LdcC Location: 1415803-1417252 bp Feature: domain Description: LdcC Location: 1 41 5803-1 41 7252 bp Feature: gene Location: 1417538-1418506 bp Feature: domain Description: YrpB Location: 1417541-1418468 bp Feature: domain Description: YrpB Location: 1 41 7541 -1 41 8468 bp Feature: gene Location: 2974238-2975860 bp Feature: domain Description: nirA Location: 2974271-2975768 bp Feature: domain Description: nirA Location: 2974271 -2975768 bp Feature: gene Location: 2975937-2976149 bp Feature: domain Description: DUF3906 Location: 2975940-2976132 bp Feature: domain Description: DUF3906 Location: 2975940-29761 32 bp Feature: gene Location: 2976227-2977492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2976428-2977046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2976428-2977046 bp Feature: domain Description: GIIM Note: maturase Location: 2977100-2977322 bp Feature: domain Description: GIIM Note: maturase Location: 29771 00-2977322 bp Feature: gene Location: 2978120-2979274 bp Feature: domain Description: PRK08064 Location: 2978129-2979254 bp Feature: domain Description: PRK08064 Location: 29781 29-2979254 bp Feature: gene Location: 2979271-2980434 bp Feature: domain Description: PRK08247 Location: 2979277-2980405 bp Feature: domain Description: PRK08247 Location: 2979277-2980405 bp Feature: gene Location: 3146098-3146763 bp Feature: domain Description: MetP Location: 3146122-3146755 bp Feature: domain Description: MetP Location: 31 461 22-31 46755 bp Feature: gene Location: 3146772-3148238 bp Feature: domain Description: PLN02805 Location: 3146862-3148227 bp Feature: domain Description: PLN02805 Location: 31 46862-31 48227 bp Feature: gene Location: 3148308-3149573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3148509-3149127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 48509-31 491 27 bp Feature: domain Description: GIIM Note: maturase Location: 3149181-3149403 bp Feature: domain Description: GIIM Note: maturase Location: 31 491 81 -31 49403 bp Feature: gene Location: 3149926-3150060 bp Feature: gene Location: 3150167-3151810 bp Feature: domain Description: PRK12344 Location: 3150197-3151748 bp Feature: domain Description: PRK1 2344 Location: 31 501 97-31 51 748 bp Feature: gene Location: 3270451-3270666 bp Feature: domain Description: SASP_tlp Location: 3270457-3270661 bp Feature: domain Description: SASP_tlp Location: 3270457-3270661 bp Feature: gene Location: 3270721-3271797 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 3270919-3271756 bp Feature: domain Description: PBP1 _ABC_uncharacterized_transporter Location: 327091 9-3271 756 bp Feature: gene Location: 3271986-3273251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3272187-3272805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32721 87-3272805 bp Feature: domain Description: GIIM Note: maturase Location: 3272859-3273081 bp Feature: domain Description: GIIM Note: maturase Location: 3272859-3273081 bp Feature: gene Location: 3273604-3273738 bp Feature: gene Location: 3273909-3274646 bp Feature: domain Description: spo_yunB Location: 3273975-3274575 bp Feature: domain Description: spo_yunB Location: 3273975-3274575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), RVT-GII, GIIM (pfam08388), CbiX (pfam01903), MhpD (COG3971), AtoC (COG2204), Mn_catalase (pfam05067), DUF4025 (pfam13217), YigB (COG1011)
PRK07006 (isocitrate dehydrogenase; Reviewed), MalateDH_bact (TIGR01763), Ggt (COG0405), OmpR (COG0745), Hydrolase_4 (pfam12146), SR1P (pfam13790), LdcC (COG1982), YrpB (COG2070), nirA (PRK09567), DUF3906 (pfam13046)
PRK08064 (cystathionine beta-lyase MetC), PRK08247 (methionine biosynthesis PLP-dependent protein), MetP (COG2011), PLN02805 (D-lactate dehydrogenase ), PRK12344 (putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional), SASP_tlp (TIGR03090), PBP1_ABC_uncharacterized_transporter, spo_yunB (TIGR02832)