myRT

myRT report for GCA_003966775.1_ASM396677v1

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Seq: AP018784.1 Escherichia coli SK1144, complete genome (5029244 bp)
Overview 1 RT 1: 2225374-2230381 bp Neighborhood of RT #1 [2225374, 2230381] DDE_Tnp_1_5 RVT-Retrons Feature: gene Location: 2225374-2225613 bp Feature: gene Location: 2225734-2226657 bp Ori: BBF19265.1 Feature: domain Description: DDE_Tnp_1_5 Location: 2225791-2226124 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 2225791 -22261 24 bp Feature: gene Location: 2227250-2229007 bp Ori: BBF19266.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2227394-2228012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2227394-222801 2 bp Feature: gene Location: 2229029-2229196 bp Feature: gene Location: 2229254-2230381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), RVT-Retrons

Seq: AP018785.1 Escherichia coli SK1144 plasmid pSK1144, nearly complete genome (169561 bp)
Overview 1 RT 1: 93035-96180 bp 2 RT 2: 108490-112278 bp Neighborhood of RT #1 [93035, 96914] PRK10173 PRK10173 RVT-GII rve Neighborhood of RT #2 [108490, 112316] InsE RVT-GII GIIM PHA02517 InsE Feature: gene Location: 93035-93484 bp Ori: BBF21974.1 Gene: agp Feature: domain Description: PRK10173 Location: 93038-93476 bp Feature: domain Description: PRK10173 Location: 93038-93476 bp Feature: gene Location: 93459-93779 bp Ori: BBF21975.1 Gene: agp Feature: domain Description: PRK10173 Location: 93462-93690 bp Feature: domain Description: PRK10173 Location: 93462 -93690 bp Feature: gene Location: 93818-94321 bp Ori: BBF21976.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94091-94163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94091-94163 bp Feature: gene Location: 94952-95170 bp Feature: gene Location: 95415-96914 bp Ori: BBF21978.1 Feature: domain Description: rve Location: 95787-96180 bp Feature: domain Description: rve Location: 95787-96180 bp Feature: gene Location: 108490-108816 bp Ori: BBF21993.1 Feature: domain Description: InsE Location: 108493-108814 bp Feature: domain Description: InsE Location: 108493-108814 bp Feature: gene Location: 109038-109256 bp Feature: gene Location: 109887-111410 bp Ori: BBF21995.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110160-110892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110160-110892 bp Feature: domain Description: GIIM Note: maturase Location: 110967-111165 bp Feature: domain Description: GIIM Note: maturase Location: 110967-111165 bp Feature: gene Location: 111527-111883 bp Ori: BBF21996.1 Feature: domain Description: PHA02517 Location: 111530-111839 bp Feature: domain Description: PHA02 517 Location: 111530-111839 bp Feature: gene Location: 111912-112316 bp Ori: BBF21997.1 Feature: domain Description: InsE Location: 111942-112278 bp Feature: domain Description: InsE Location: 111942 -112 2 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, rve (pfam00665), InsE (COG2963), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)