myRT

myRT report for GCA_003966855.1_ASM396685v1

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Seq: AP018405.1 Lactobacillus plantarum SN35N DNA, complete genome (3267626 bp)
Overview 1 RT 1: 662743-667790 bp 2 RT 2: 2088606-2093686 bp Neighborhood of RT #1 [662743, 668038] fumC RVT-GII COG3666 DDE_Tnp_1 Neighborhood of RT #2 [2088606, 2093694] COG4333 Phage_int_SAM_5 INT_ICEBs1_C_like RVT-Retrons gpmA Feature: gene Location: 662743-664125 bp Ori: BBA81006.1 Gene: fumC Feature: domain Description: fumC Location: 662746-664114 bp Feature: domain Description: fumC Location: 662746-6641 1 4 bp Feature: gene Location: 664600-664818 bp Feature: gene Location: 664973-665539 bp Ori: BBA81008.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 664997-665471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 664997-665471 bp Feature: gene Location: 665830-665973 bp Feature: gene Location: 666266-668038 bp Ori: BBA81010.1 Gene: isp2 Feature: domain Description: COG3666 Location: 666284-666725 bp Feature: domain Description: COG3666 Location: 666284-666725 bp Feature: domain Description: DDE_Tnp_1 Location: 667037-667790 bp Feature: domain Description: DDE_Tnp_1 Location: 667037-667790 bp Feature: gene Location: 2088606-2089232 bp Ori: BBA82365.1 Feature: domain Description: COG4333 Location: 2088672-2089101 bp Feature: domain Description: COG4333 Location: 2088672-20891 01 bp Feature: gene Location: 2089225-2090355 bp Ori: BBA82366.1 Feature: domain Description: Phage_int_SAM_5 Location: 2089414-2089672 bp Feature: domain Description: Phage_int_SAM_5 Location: 208941 4-2089672 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2089792-2090293 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 2089792-2090293 bp Feature: gene Location: 2091189-2092133 bp Ori: BBA82367.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2091318-2091864 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2091 31 8-2091 864 bp Feature: gene Location: 2092239-2093189 bp Feature: gene Location: 2093479-2093694 bp Ori: BBA82369.1 Gene: gpmA Feature: domain Description: gpmA Location: 2093482-2093686 bp Feature: domain Description: gpmA Location: 2093482-2093686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fumC (PRK00485), RVT-GII, COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), COG4333 (Uncharacterized protein ), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189), RVT-Retrons, gpmA (PRK14120)