myRT

myRT report for GCA_003966915.1_ASM396691v1

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Seq: AP018150.1 Mycoavidus cysteinexigens DNA, complete genome, strain: B1-EB (2795004 bp)
Overview 1 RT 1: 7487-17491 bp 2 RT 2: 152416-154650 bp 3 RT 3: 441112-453874 bp 4 RT 4: 1063551-1070478 bp 5 RT 5: 1334185-1340543 bp 6 RT 6: 2074997-2083431 bp Neighborhood of RT #1 [7487, 17553] NACHT NOD2_WH HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT_N RVT-GII GIIM HNHc InsE DEDDh Neighborhood of RT #2 [152416, 154859] HEAT_2 HEAT_2 RVT-GII GIIM Neighborhood of RT #3 [441112, 454179] COG5635 YjbI WD40 WD40 WD40 WD40 WD40 WD40 WD40 RVT-GII COG5635 YjbI WD40 WD40 WD40 WD40 WD40 WD40 COG5635 YjbI KOG0266 KOG0266 KOG0268 WD40 WD40 KOG0266 WD40 WD40 Neighborhood of RT #4 [1063551, 1071215] DUF772 RVT-GII GIIM NACHT YjbI WD40 WD40 WD40 WD40 WD40 WD40 WD40 WD40 Neighborhood of RT #5 [1334185, 1340638] entF entF RVT-GII GIIM IS285 tilS tilS Neighborhood of RT #6 [2074997, 2083472] InsE InsE PHA02517 RVT-GII COG5635 YjbI WD40 WD40 WD40 WD40 DUF1016_N YhcG_C Feature: gene Location: 7487-7678 bp Feature: gene Location: 8933-13072 bp Ori: BBE08168.1 Feature: domain Description: NACHT Location: 9284-9743 bp Feature: domain Description: NACHT Location: 9284-9743 bp Feature: domain Description: NOD2_WH Location: 10034-10121 bp Feature: domain Description: NOD2_WH Location: 1 0034-1 01 21 bp Feature: domain Description: HEAT_2 Location: 10778-11051 bp Feature: domain Description: HEAT_2 Location: 1 0778-1 1 051 bp Feature: domain Description: HEAT_2 Location: 11087-11315 bp Feature: domain Description: HEAT_2 Location: 1 1 087-1 1 31 5 bp Feature: domain Description: HEAT_2 Location: 11492-11753 bp Feature: domain Description: HEAT_2 Location: 1 1 492-1 1 753 bp Feature: domain Description: HEAT_2 Location: 11804-12068 bp Feature: domain Description: HEAT_2 Location: 1 1 804-1 2068 bp Feature: domain Description: HEAT_2 Location: 12101-12365 bp Feature: domain Description: HEAT_2 Location: 1 21 01 -1 2365 bp Feature: domain Description: HEAT_2 Location: 12560-12788 bp Feature: domain Description: HEAT_2 Location: 1 2560-1 2788 bp Feature: gene Location: 13470-15089 bp Ori: BBE08169.1 Feature: domain Description: RVT_N Location: 13476-13671 bp Feature: domain Description: RVT_N Location: 1 3476-1 3671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13716-14364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 6-1 4364 bp Feature: domain Description: GIIM Note: maturase Location: 14418-14649 bp Feature: domain Description: GIIM Note: maturase Location: 1 441 8-1 4649 bp Feature: domain Description: HNHc Note: nucleases Location: 14877-15033 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4877-1 5033 bp Feature: gene Location: 15681-16013 bp Ori: BBE08170.1 Feature: domain Description: InsE Location: 15708-16011 bp Feature: domain Description: InsE Location: 1 5708-1 601 1 bp Feature: gene Location: 16963-17553 bp Ori: BBE08171.1 Feature: domain Description: DEDDh Location: 17002-17491 bp Feature: domain Description: DEDDh Location: 1 7002-1 7491 bp Feature: gene Location: 152416-152625 bp Feature: gene Location: 152627-153475 bp Ori: BBE08284.1 Feature: domain Description: HEAT_2 Location: 152651-152909 bp Feature: domain Description: HEAT_2 Location: 1 52651 -1 52909 bp Feature: domain Description: HEAT_2 Location: 152945-153206 bp Feature: domain Description: HEAT_2 Location: 1 52945-1 53206 bp Feature: gene Location: 153780-154859 bp Ori: BBE08285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153783-154365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 53783-1 54365 bp Feature: domain Description: GIIM Note: maturase Location: 154416-154650 bp Feature: domain Description: GIIM Note: maturase Location: 1 5441 6-1 54650 bp Feature: gene Location: 441112-441333 bp Feature: gene Location: 441446-445273 bp Ori: BBE08543.1 Feature: domain Description: COG5635 Location: 441785-442460 bp Feature: domain Description: COG5635 Location: 441 785-442460 bp Feature: domain Description: YjbI Location: 443150-443330 bp Feature: domain Description: YjbI Location: 4431 50-443330 bp Feature: domain Description: WD40 Location: 443354-443681 bp Feature: domain Description: WD40 Location: 443354-443681 bp Feature: domain Description: WD40 Location: 443705-443813 bp Feature: domain Description: WD40 Location: 443705-44381 3 bp Feature: domain Description: WD40 Location: 443825-443942 bp Feature: domain Description: WD40 Location: 443825-443942 bp Feature: domain Description: WD40 Location: 443963-444071 bp Feature: domain Description: WD40 Location: 443963-444071 bp Feature: domain Description: WD40 Location: 444083-444197 bp Feature: domain Description: WD40 Location: 444083-4441 97 bp Feature: domain Description: WD40 Location: 444224-444287 bp Feature: domain Description: WD40 Location: 444224-444287 bp Feature: domain Description: WD40 Location: 444377-445109 bp Feature: domain Description: WD40 Location: 444377-4451 09 bp Feature: gene Location: 445430-445678 bp Ori: BBE08544.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445436-445583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445436-445583 bp Feature: gene Location: 446224-450033 bp Ori: BBE08545.1 Feature: domain Description: COG5635 Location: 446617-446968 bp Feature: domain Description: COG5635 Location: 44661 7-446968 bp Feature: domain Description: YjbI Location: 447844-448012 bp Feature: domain Description: YjbI Location: 447844-44801 2 bp Feature: domain Description: WD40 Location: 448039-448897 bp Feature: domain Description: WD40 Location: 448039-448897 bp Feature: domain Description: WD40 Location: 448936-449029 bp Feature: domain Description: WD40 Location: 448936-449029 bp Feature: domain Description: WD40 Location: 449050-449158 bp Feature: domain Description: WD40 Location: 449050-4491 58 bp Feature: domain Description: WD40 Location: 449182-449290 bp Feature: domain Description: WD40 Location: 4491 82-449290 bp Feature: domain Description: WD40 Location: 449314-449422 bp Feature: domain Description: WD40 Location: 44931 4-449422 bp Feature: domain Description: WD40 Location: 449455-449860 bp Feature: domain Description: WD40 Location: 449455-449860 bp Feature: gene Location: 450379-454179 bp Ori: BBE08546.1 Feature: domain Description: COG5635 Location: 450679-451192 bp Feature: domain Description: COG5635 Location: 450679-451 1 92 bp Feature: domain Description: YjbI Location: 452077-452248 bp Feature: domain Description: YjbI Location: 452077-452248 bp Feature: domain Description: KOG0266 Location: 452272-452524 bp Feature: domain Description: KOG0266 Location: 452272-452524 bp Feature: domain Description: KOG0266 Location: 452539-452887 bp Feature: domain Description: KOG0266 Location: 452539-452887 bp Feature: domain Description: KOG0268 Location: 452899-453007 bp Feature: domain Description: KOG0268 Location: 452899-453007 bp Feature: domain Description: WD40 Location: 453007-453121 bp Feature: domain Description: WD40 Location: 453007-4531 21 bp Feature: domain Description: WD40 Location: 453130-453247 bp Feature: domain Description: WD40 Location: 4531 30-453247 bp Feature: domain Description: KOG0266 Location: 453268-453640 bp Feature: domain Description: KOG0266 Location: 453268-453640 bp Feature: domain Description: WD40 Location: 453640-453751 bp Feature: domain Description: WD40 Location: 453640-453751 bp Feature: domain Description: WD40 Location: 453763-453874 bp Feature: domain Description: WD40 Location: 453763-453874 bp Feature: gene Location: 1063551-1064789 bp Ori: BBE09043.1 Feature: domain Description: DUF772 Location: 1063821-1064025 bp Feature: domain Description: DUF772 Location: 1 063821 -1 064025 bp Feature: gene Location: 1065111-1065308 bp Feature: gene Location: 1065305-1066714 bp Ori: BBE09045.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1065659-1066316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 065659-1 06631 6 bp Feature: domain Description: GIIM Note: maturase Location: 1066397-1066625 bp Feature: domain Description: GIIM Note: maturase Location: 1 066397-1 066625 bp Feature: gene Location: 1067055-1067264 bp Feature: gene Location: 1067610-1071215 bp Ori: BBE09047.1 Feature: domain Description: NACHT Location: 1068069-1068528 bp Feature: domain Description: NACHT Location: 1 068069-1 068528 bp Feature: domain Description: YjbI Location: 1069263-1069431 bp Feature: domain Description: YjbI Location: 1 069263-1 069431 bp Feature: domain Description: WD40 Location: 1069467-1069521 bp Feature: domain Description: WD40 Location: 1 069467-1 069521 bp Feature: domain Description: WD40 Location: 1069593-1069692 bp Feature: domain Description: WD40 Location: 1 069593-1 069692 bp Feature: domain Description: WD40 Location: 1069704-1069815 bp Feature: domain Description: WD40 Location: 1 069704-1 06981 5 bp Feature: domain Description: WD40 Location: 1069824-1069938 bp Feature: domain Description: WD40 Location: 1 069824-1 069938 bp Feature: domain Description: WD40 Location: 1069986-1070067 bp Feature: domain Description: WD40 Location: 1 069986-1 070067 bp Feature: domain Description: WD40 Location: 1070094-1070199 bp Feature: domain Description: WD40 Location: 1 070094-1 0701 99 bp Feature: domain Description: WD40 Location: 1070226-1070346 bp Feature: domain Description: WD40 Location: 1 070226-1 070346 bp Feature: domain Description: WD40 Location: 1070367-1070478 bp Feature: domain Description: WD40 Location: 1 070367-1 070478 bp Feature: gene Location: 1334185-1334853 bp Ori: BBE09233.1 Feature: domain Description: entF Location: 1334218-1334830 bp Feature: domain Description: entF Location: 1 33421 8-1 334830 bp Feature: gene Location: 1334850-1335419 bp Ori: BBE09234.1 Feature: domain Description: entF Location: 1334856-1335333 bp Feature: domain Description: entF Location: 1 334856-1 335333 bp Feature: gene Location: 1335889-1337205 bp Ori: BBE09235.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1336192-1336819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3361 92-1 33681 9 bp Feature: domain Description: GIIM Note: maturase Location: 1336894-1337110 bp Feature: domain Description: GIIM Note: maturase Location: 1 336894-1 3371 1 0 bp Feature: gene Location: 1337436-1338662 bp Ori: BBE09236.1 Feature: domain Description: IS285 Location: 1337505-1338645 bp Feature: domain Description: IS285 Location: 1 337505-1 338645 bp Feature: gene Location: 1339145-1340638 bp Ori: BBE09237.1 Feature: domain Description: tilS Location: 1339220-1340186 bp Feature: domain Description: tilS Location: 1 339220-1 3401 86 bp Feature: domain Description: tilS Location: 1340456-1340543 bp Feature: domain Description: tilS Location: 1 340456-1 340543 bp Feature: gene Location: 2074997-2075521 bp Ori: BBE09887.1 Feature: domain Description: InsE Location: 2075003-2075150 bp Feature: domain Description: InsE Location: 2075003-20751 50 bp Feature: domain Description: InsE Location: 2075156-2075504 bp Feature: domain Description: InsE Location: 20751 56-2075504 bp Feature: gene Location: 2075551-2076363 bp Ori: BBE09888.1 Feature: domain Description: PHA02517 Location: 2075578-2076331 bp Feature: domain Description: PHA0251 7 Location: 2075578-2076331 bp Feature: gene Location: 2076431-2076685 bp Ori: BBE09889.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2076434-2076599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2076434-2076599 bp Feature: gene Location: 2077726-2082111 bp Ori: BBE09890.1 Feature: domain Description: COG5635 Location: 2078575-2079430 bp Feature: domain Description: COG5635 Location: 2078575-2079430 bp Feature: domain Description: YjbI Location: 2079874-2080045 bp Feature: domain Description: YjbI Location: 2079874-2080045 bp Feature: domain Description: WD40 Location: 2080075-2080798 bp Feature: domain Description: WD40 Location: 2080075-2080798 bp Feature: domain Description: WD40 Location: 2080810-2081683 bp Feature: domain Description: WD40 Location: 208081 0-2081 683 bp Feature: domain Description: WD40 Location: 2081695-2081794 bp Feature: domain Description: WD40 Location: 2081 695-2081 794 bp Feature: domain Description: WD40 Location: 2081806-2081926 bp Feature: domain Description: WD40 Location: 2081 806-2081 926 bp Feature: gene Location: 2082384-2083472 bp Ori: BBE09891.1 Feature: domain Description: DUF1016_N Location: 2082465-2082894 bp Feature: domain Description: DUF1 01 6_N Location: 2082465-2082894 bp Feature: domain Description: YhcG_C Location: 2082969-2083431 bp Feature: domain Description: YhcG_C Location: 2082969-2083431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NACHT (pfam05729), NOD2_WH (pfam17779), HEAT_2 (pfam13646), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsE (COG2963), DEDDh (cd06127), COG5635 (Predicted NTPase, NACHT family domain )
YjbI (COG2346), WD40 (smart00320), KOG0266 (KOG0266, WD40 repeat-containing protein ), KOG0268 (KOG0268, Sof1-like rRNA processing protein (contains WD40 repeats) ), DUF772 (pfam05598), entF (PRK10252), IS285 (COG3328), tilS (PRK10660), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761)
YhcG_C